Search result

BaseInfo

ncRNA ID	novel_osa_miR75
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:12385806-12385929 [+]
Reference genome	IRGSP-1.0
Source	SRR1738242;SRR1742990;SRR1742996;SRR1743000;SRR1743002;SRR1849765;SRR1849766;SRR1849772;SRR1849773;SRR1849775;SRR1849776;SRR1849784;SRR2040381;SRR2040382;SRR2040383;SRR2040384;SRR2040385;SRR2040386;SRR2040387;SRR2040388;SRR2040389;SRR2040390;SRR2040391;SRR2040392;SRR2040394;SRR2040395;SRR2040396;SRR2040397;SRR2040398;SRR2040400;SRR2040401;SRR2040402;SRR2040403;SRR2040404;SRR2040405;SRR2040406;SRR2040407;SRR2040408;SRR2040409;SRR2040410;SRR2040411;SRR2857728;SRR2857729;SRR2857730;SRR2857731;SRR2857732;SRR3085192;SRR3123630;SRR3123652;SRR5049785;SRR5351739;SRR5351742;SRR1609314;SRR1609317;SRR1612403;SRR1612404;SRR1738209;SRR1738224;SRR1738225
Length	24
Mature sequence(if miRNA)	1 - AAAUAUAGCAAUCUAGUACUGGAU - 24
Stem-loop(if miRNA)	--                  C     CGA      A  ---U      C    A      -A  C   AAAUAUAGCAAUCUAGUA UGGAU   ACAUAA CU    GUACUA AAAU UGGACA  AC U   |||||||||||||||||| |||||   |||||| ||    |||||| |||| ||||||  || C   UUUAUAUCGUUGGAUCAU GCUUA   UGUGUU GA    CAUGAU UUUA ACCUGU  UG C GU                  A     ---      G  UUAU      A    G      CC  U
Stem-loop sequence	AAAUAUAGCAAUCUAGUACUGGAUCGAACAUAAACUUGUACUACAAAUAUGGACAAACCUCCUGUCCUGUCCAGAUUUAUAGUACUAUUAGGUUGUGUAUUCGAUACUAGGUUGCUAUAUUUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK100614.1	ncRNA:24   UAGGUCAUGAUCUAACGAUAUAAA   1   ||||||||||||=||||||||||| targets:1620   AUCCAGUACUAGGUUGCUAUAUUU   1643 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023108A15, full insert sequence	NA	coding protein	psRNATarget
LQ236103.1	ncRNA:24   UAGGUCAUGAUCUAACGAUAUAAA   1   ||||=|||||||||||=||||||* targets:115   AUCCGGUACUAGAUUGUUAUAUUA   138 Target Full Sequence	2.5	Sequence 2098 from Patent EP2985353	NA	coding protein	psRNATarget
HI403973.1	ncRNA:24   UAGGUCAUGAUCUAACGAUAUAAA   1   ||||=|||||||||||=||||||* targets:115   AUCCGGUACUAGAUUGUUAUAUUA   138 Target Full Sequence	2.5	Sequence 2098 from Patent EP2074227	NA	coding protein	psRNATarget
JB164434.1	ncRNA:24   UAGGUCAUGAUCUAACGAUAUAAA   1   ||||=|||||||||||=||||||* targets:115   AUCCGGUACUAGAUUGUUAUAUUA   138 Target Full Sequence	2.5	Sequence 2098 from Patent EP2559767	NA	coding protein	psRNATarget
HI404552.1	ncRNA:24   UAGGUCAUGAUCUAACGAUAUAAA   1   |||=||||||||=||||||||||* targets:84   AUCUAGUACUAGGUUGCUAUAUUA   107 Target Full Sequence	2.5	Sequence 2677 from Patent EP2074227	NA	coding protein	psRNATarget
JB165013.1	ncRNA:24   UAGGUCAUGAUCUAACGAUAUAAA   1   |||=||||||||=||||||||||* targets:84   AUCUAGUACUAGGUUGCUAUAUUA   107 Target Full Sequence	2.5	Sequence 2677 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236682.1	ncRNA:24   UAGGUCAUGAUCUAACGAUAUAAA   1   |||=||||||||=||||||||||* targets:84   AUCUAGUACUAGGUUGCUAUAUUA   107 Target Full Sequence	2.5	Sequence 2677 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015770193.1	ncRNA:24   UAGGUCAUGAUCUAACGAUAUAAA   1   ||=|=*||||||=||||||||||| targets:1931   AUUCGAUACUAGGUUGCUAUAUUU   1954 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329136 (LOC4329136), transcript variant X1, mRNA	uncharacterized LOC4329136(LOC4329136)	coding protein	psRNATarget
LQ236027.1	ncRNA:24   UAGGUCAUGAUCUAACGAUAUAAA   1   |||=|||*|||||||||||||||* targets:72   AUCUAGUCCUAGAUUGCUAUAUUC   95 Target Full Sequence	2.0	Sequence 2022 from Patent EP2985353	NA	coding protein	psRNATarget
JB164358.1	ncRNA:24   UAGGUCAUGAUCUAACGAUAUAAA   1   |||=|||*|||||||||||||||* targets:72   AUCUAGUCCUAGAUUGCUAUAUUC   95 Target Full Sequence	2.0	Sequence 2022 from Patent EP2559767	NA	coding protein	psRNATarget
HI403897.1	ncRNA:24   UAGGUCAUGAUCUAACGAUAUAAA   1   |||=|||*|||||||||||||||* targets:72   AUCUAGUCCUAGAUUGCUAUAUUC   95 Target Full Sequence	2.0	Sequence 2022 from Patent EP2074227	NA	coding protein	psRNATarget
AK288458.1	ncRNA:24   UAGGUCAUGAUCUAACGAUAUAAA   1   =|||*|||=||||||||||||||* targets:417   GUCCUGUAUUAGAUUGCUAUAUUA   440 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090035E13, full insert sequence	NA	coding protein	psRNATarget