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BaseInfo

ncRNA ID	novel_osa_miR71
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:3529828-3529986 [-]
Reference genome	IRGSP-1.0
Source	SRR1738242;SRR2040383;SRR2040397;SRR2040404;SRR3123652;SRR1738237
Length	21
Mature sequence(if miRNA)	139 - UAUCAACGUUUGACCAUUCGU - 159
Stem-loop(if miRNA)	--UA    CG                            -     ----------------   -   GAAAAAUAUUUAUGUCAUGCU     UCAA  UUUGACCAUUCGUUUUAUUUAAAAUUUU UGUGA                AAA UAU                     U     ||||  |||||||||||||||||||||||||||| |||||                ||| |||                     A     GGUU  AAACUGGUAAGCGAAAUAAGUUUUAAAA AUAUU                ACA UGA                     A AAAA    AU                            U     AAUAAUAAAUAAAAUA   U   AUUAAGUAGUAGUUUACAAGA
Stem-loop sequence	UAUCAACGUUUGACCAUUCGUUUUAUUUAAAAUUUUUGUGAAAAUAUGAAAAAUAUUUAUGUCAUGCUUAAAGAACAUUUGAUGAUGAAUUAAGUUACAAUAAAAUAAAUAAUAAUUAUAUAAAAUUUUGAAUAAAGCGAAUGGUCAAAUAUUGGAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT830705.1	ncRNA:21   UGCUUACCAGUUUGCAACUAU   1   ||||||||||||||||||||* targets:377   ACGAAUGGUCAAACGUUGAUU   397 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI024N07, full insert sequence	NA	coding protein	psRNATarget
JB164568.1	ncRNA:21   UGCUUACCAGUUUGCAACUAU   1   ||||=|||||||||||||||* targets:143   ACGAGUGGUCAAACGUUGAUU   163 Target Full Sequence	2.0	Sequence 2232 from Patent EP2559767	NA	coding protein	psRNATarget
HI404107.1	ncRNA:21   UGCUUACCAGUUUGCAACUAU   1   ||||=|||||||||||||||* targets:143   ACGAGUGGUCAAACGUUGAUU   163 Target Full Sequence	2.0	Sequence 2232 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236237.1	ncRNA:21   UGCUUACCAGUUUGCAACUAU   1   ||||=|||||||||||||||* targets:143   ACGAGUGGUCAAACGUUGAUU   163 Target Full Sequence	2.0	Sequence 2232 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015792366.1	ncRNA:21   UGCUUACCAGUUUGCAACUAU   1   ||||||||||||||||||=|* targets:840   ACGAAUGGUCAAACGUUGGUC   860 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9271886 (LOC9271886), mRNA	uncharacterized LOC9271886(LOC9271886)	coding protein	psRNATarget
AK287754.1	ncRNA:21   UGCUUACCAGUUUGCAACUAU   1   ||||||||||||||||||=|* targets:848   ACGAAUGGUCAAACGUUGGUC   868 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065157N06, full insert sequence	NA	coding protein	psRNATarget
AK103228.1	ncRNA:21   UGCUUACCAGUUUGCAACUAU   1   ||||||||||||||||||=|* targets:2787   ACGAAUGGUCAAACGUUGGUC   2807 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033123C21, full insert sequence	NA	coding protein	psRNATarget
AK241906.1	ncRNA:21   UGCUUACCAGUUUGCAACUAU   1   |||||||||||||*||||||| targets:1406   ACGAAUGGUCAAAAGUUGAUA   1426 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J075049G22, full insert sequence	NA	coding protein	psRNATarget
XM_015783195.1	ncRNA:21   UGCUUACCAGUUUGCAACUAU   1   ||||||*||=||||||||||| targets:1674   ACGAAUAGUUAAACGUUGAUA   1694 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group FHA domain-containing protein DDL (LOC4339504), partial mRNA	FHA domain-containing protein DDL(LOC4339504)	coding protein	psRNATarget
AK288622.1	ncRNA:21   UGCUUACCAGUUUGCAACUAU   1   ||||||*||=||||||||||| targets:2683   ACGAAUAGUUAAACGUUGAUA   2703 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090054F13, full insert sequence	NA	coding protein	psRNATarget
AK288382.1	ncRNA:21   UGCUUACCAGUUUGCAACUAU   1   |=|||||||||||||||||*| targets:1539   AUGAAUGGUCAAACGUUGAAA   1559 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090026M23, full insert sequence	NA	coding protein	psRNATarget
HI403504.1	ncRNA:21   UGCUUACCAGUUUGCAACUAU   1   ||||||||||||||*|||||* targets:167   ACGAAUGGUCAAACAUUGAUU   187 Target Full Sequence	2.5	Sequence 1629 from Patent EP2074227	NA	coding protein	psRNATarget
JB163965.1	ncRNA:21   UGCUUACCAGUUUGCAACUAU   1   ||||||||||||||*|||||* targets:167   ACGAAUGGUCAAACAUUGAUU   187 Target Full Sequence	2.5	Sequence 1629 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235634.1	ncRNA:21   UGCUUACCAGUUUGCAACUAU   1   ||||||||||||||*|||||* targets:167   ACGAAUGGUCAAACAUUGAUU   187 Target Full Sequence	2.5	Sequence 1629 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015768863.1	ncRNA:21   UGCUUACCAGUUUGCAACUAU   1   ||||||||||||||||||*|* targets:211   ACGAAUGGUCAAACGUUGUUC   231 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107279962 (LOC107279962), mRNA	uncharacterized LOC107279962(LOC107279962)	coding protein	psRNATarget
AK288521.1	ncRNA:21   UGCUUACCAGUUUGCAACUAU   1   ||||||||||||||||||*|* targets:217   ACGAAUGGUCAAACGUUGUUC   237 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090044A07, full insert sequence	NA	coding protein	psRNATarget
AK288330.1	ncRNA:21   UGCUUACCAGUUUGCAACUAU   1   |||||||*||||||*|||||| targets:1244   ACGAAUGAUCAAACAUUGAUA   1264 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090022I21, full insert sequence	NA	coding protein	psRNATarget