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BaseInfo

ncRNA ID	novel_osa_miR61
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:41182363-41182536 [+]
Reference genome	IRGSP-1.0
Source	SRR1738242;SRR1743006;SRR2040386;SRR3123646;SRR3123652;SRR1738228
Length	22
Mature sequence(if miRNA)	1 - UUUUUAUUUGUAACGUUUGACC - 22
Stem-loop(if miRNA)	--           -AAC      C    UA       UG       ----------------AG   AAAUAUAAAAAAAGAUAAGUCAUAUGUA   UUUUUAUUUGU    GUUUGA CAUU  UUUUAUU  AAAAAUU                  UGC                            A   |||||||||||    |||||| ||||  |||||||  |||||||                  |||                            A   AAAAAUAAAUA    CAAACU GUAA  AGGAUAA  UUUUUAA                  AAC                            A UC           GUUA      A    GC       GU       AACCUUAAUAAUAAAUAA   AAACAGUUAACGAAAUAAUAGUUUUCAU
Stem-loop sequence	UUUUUAUUUGUAACGUUUGACCAUUUAUUUUAUUUGAAAAAUUAGUGCAAAUAUAAAAAAAGAUAAGUCAUAUGUAAAAUACUUUUGAUAAUAAAGCAAUUGACAAACAAAAUAAAUAAUAAUUCCAAAAUUUUUUGAAUAGGACGAAUGAUCAAACAUUGAUAAAUAAAAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403666.1	ncRNA:22   CCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||*||||| targets:153   GGUCAAACGUUACAAACAAAAA   174 Target Full Sequence	1.5	Sequence 1791 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235796.1	ncRNA:22   CCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||*||||| targets:153   GGUCAAACGUUACAAACAAAAA   174 Target Full Sequence	1.5	Sequence 1791 from Patent EP2985353	NA	coding protein	psRNATarget
JB164127.1	ncRNA:22   CCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||*||||| targets:153   GGUCAAACGUUACAAACAAAAA   174 Target Full Sequence	1.5	Sequence 1791 from Patent EP2559767	NA	coding protein	psRNATarget
HI404009.1	ncRNA:22   CCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||*||||| targets:156   GGUCAAACGUUACAAACAAAAA   177 Target Full Sequence	1.5	Sequence 2134 from Patent EP2074227	NA	coding protein	psRNATarget
JB164470.1	ncRNA:22   CCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||*||||| targets:156   GGUCAAACGUUACAAACAAAAA   177 Target Full Sequence	1.5	Sequence 2134 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236139.1	ncRNA:22   CCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||*||||| targets:156   GGUCAAACGUUACAAACAAAAA   177 Target Full Sequence	1.5	Sequence 2134 from Patent EP2985353	NA	coding protein	psRNATarget
JB164189.1	ncRNA:22   CCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||*||||| targets:159   GGUCAAACGUUACAAACAAAAA   180 Target Full Sequence	1.5	Sequence 1853 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235858.1	ncRNA:22   CCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||*||||| targets:159   GGUCAAACGUUACAAACAAAAA   180 Target Full Sequence	1.5	Sequence 1853 from Patent EP2985353	NA	coding protein	psRNATarget
HI403728.1	ncRNA:22   CCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||*||||| targets:159   GGUCAAACGUUACAAACAAAAA   180 Target Full Sequence	1.5	Sequence 1853 from Patent EP2074227	NA	coding protein	psRNATarget
CT831424.1	ncRNA:22   CCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||*||||| targets:719   GGUCAAACGUUACAAACAAAAA   740 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN038D01, full insert sequence	NA	coding protein	psRNATarget
AK107988.1	ncRNA:22   CCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||*||||| targets:721   GGUCAAACGUUACAAACAAAAA   742 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-135-F03, full insert sequence	NA	coding protein	psRNATarget
XM_015779114.1	ncRNA:22   CCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||*||||| targets:759   GGUCAAACGUUACAAACAAAAA   780 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4326202 (LOC4326202), mRNA	uncharacterized LOC4326202(LOC4326202)	coding protein	psRNATarget
AK109584.1	ncRNA:22   CCAGUUUGCAAUGUUUAUUUUU   1   ||||||||*||||||||||||| targets:1116   GGUCAAACAUUACAAAUAAAAA   1137 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-137-A10, full insert sequence	NA	coding protein	psRNATarget
XM_015780608.1	ncRNA:22   CCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||*||||| targets:1787   GGUCAAACGUUACAAACAAAAA   1808 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group amino acid permease 3 (LOC4336246), mRNA	amino acid permease 3(LOC4336246)	coding protein	psRNATarget
AK288465.1	ncRNA:22   CCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||*||||| targets:830   GGUCAAACGUUACAAACAAAAA   851 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090036M08, full insert sequence	NA	coding protein	psRNATarget