Search result

BaseInfo

ncRNA ID	novel_osa_miR56
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:2307352-2307522 [-]
Reference genome	IRGSP-1.0
Source	SRR1738242;SRR1849765;SRR1849769;SRR1849775;SRR2040383;SRR2040387;SRR2040397;SRR2040400;SRR2040401;SRR2040405;SRR2040411;SRR2857733;SRR3123650;SRR3123652;SRR1738239
Length	21
Mature sequence(if miRNA)	151 - GACGUGACCUACAACUUUGUA - 171
Stem-loop(if miRNA)	--       C                   -----------------------A      UGAAUUAAAACUGUUUAGGGUCCCAAAAUAUUGUUGCA   GACGUGA CUACAACUUUGUAGUUGAA                        AGUUUU                                      U   ||||||| |||||||||||||||||||                        ||||||   CUGCGCU GAUGUUGAAACAUCAACUU                        CAGGGU                                      G AG       A                   AAUAAAAUAAAAUUCAGUAAAAAA      UUUACAUUAAAAUUUUAAUUUUAAAGUUUUAGAUAUUU
Stem-loop sequence	GACGUGACCUACAACUUUGUAGUUGAAAAGUUUUUGAAUUAAAACUGUUUAGGGUCCCAAAAUAUUGUUGCAUGUUUAUAGAUUUUGAAAUUUUAAUUUUAAAAUUACAUUUUGGGACAAAAAAUGACUUAAAAUAAAAUAAUUCAACUACAAAGUUGUAGAUCGCGUCGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288437.1	ncRNA:21   AUGUUUCAACAUCCAGUGCAG   1   |||||||||||||||||=||| targets:1398   UACAAAGUUGUAGGUCAUGUC   1418 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090034B12, full insert sequence	NA	coding protein	psRNATarget