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BaseInfo

ncRNA ID	novel_osa_miR55
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:4967603-4967698 [+]
Reference genome	IRGSP-1.0
Source	SRR1738242;SRR1738243;SRR1743000;SRR1743002;SRR1743006;SRR1849765;SRR1849767;SRR1849769;SRR1849770;SRR1849771;SRR1849772;SRR1849773;SRR1849774;SRR1849776;SRR2040382;SRR2040384;SRR2040386;SRR2040387;SRR2040388;SRR2040390;SRR2040391;SRR2040392;SRR2040393;SRR2040394;SRR2040395;SRR2040397;SRR2040398;SRR2040399;SRR2040400;SRR2040401;SRR2040402;SRR2040403;SRR2040404;SRR2040405;SRR2040406;SRR2040407;SRR2040408;SRR2040409;SRR2040410;SRR2040411;SRR2857728;SRR2857729;SRR2857730;SRR2857731;SRR2857733;SRR3123630;SRR3123645;SRR3123646;SRR3123650;SRR3123651;SRR3123652;SRR3123653;SRR3234040;SRR3234042;SRR3234044;SRR5049778;SRR5049779;SRR5049786;SRR5049787;SRR5049791;SRR5049792;SRR5351738;SRR5351739;SRR5351740;SRR1612403;SRR1738209;SRR1738225;SRR1738226;SRR1738227;SRR1738228;SRR1738237;SRR1738239;SRR1738240;SRR1738241
Length	24
Mature sequence(if miRNA)	1 - AAAAUCAAUUUUUCCAGGCGGACC - 24
Stem-loop(if miRNA)	--       -               C                   C AA   AAAAUCA AUUUUUCCAGGCGGA CACUUAAGAGGUCCGCCUG G  A   ||||||| ||||||||||||||| ||||||||||||||||||| |   UUUUAGU UAAAAAGGUCCGCCU GUGAAUUCUCCAGGCGGAC C  A AU       A               C                   - AU
Stem-loop sequence	AAAAUCAAUUUUUCCAGGCGGACCACUUAAGAGGUCCGCCUGCGAAAAUACCAGGCGGACCUCUUAAGUGCUCCGCCUGGAAAAAUAUGAUUUUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235978.1	ncRNA:24   CCAGGCGGACCUUUUUAACUAAAA   1   |||||||||*|||||||||||||| targets:80   GGUCCGCCUAGAAAAAUUGAUUUU   103 Target Full Sequence	1.0	Sequence 1973 from Patent EP2985353	NA	coding protein	psRNATarget
HI403848.1	ncRNA:24   CCAGGCGGACCUUUUUAACUAAAA   1   |||||||||*|||||||||||||| targets:80   GGUCCGCCUAGAAAAAUUGAUUUU   103 Target Full Sequence	1.0	Sequence 1973 from Patent EP2074227	NA	coding protein	psRNATarget
JB164309.1	ncRNA:24   CCAGGCGGACCUUUUUAACUAAAA   1   |||||||||*|||||||||||||| targets:80   GGUCCGCCUAGAAAAAUUGAUUUU   103 Target Full Sequence	1.0	Sequence 1973 from Patent EP2559767	NA	coding protein	psRNATarget
AK110535.1	ncRNA:24   CCAGGCGGACCUUUUUAACUAAAA   1   ||||=||*|||||||||||||||| targets:867   GGUCUGCGUGGAAAAAUUGAUUUU   890 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-168-A08, full insert sequence	NA	coding protein	psRNATarget
AK289059.1	ncRNA:24   CCAGGCGGACCUUUUUAACUAAAA   1   |||=||||||||||||*||||||| targets:1380   GGUUCGCCUGGAAAAAAUGAUUUU   1403 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090093I21, full insert sequence	NA	coding protein	psRNATarget
AK288182.1	ncRNA:24   CCAGGCGGACCUUUUUAACUAAAA   1   ||||=||*||*||||||||||||| targets:1653   GGUCUGCAUGUAAAAAUUGAUUUU   1676 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090005J12, full insert sequence	NA	coding protein	psRNATarget
XM_015780614.1	ncRNA:24   CCAGGCGGACCUUUUUAACUAAAA   1   ***||||||||||||=|||||||* targets:517   CCGCCGCCUGGAAAAGUUGAUUUG   540 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266980 (LOC9266980), transcript variant X4, mRNA	uncharacterized LOC9266980(LOC9266980)	coding protein	psRNATarget
AK073678.1	ncRNA:24   CCAGGCGGACCUUUUUAACUAAAA   1   ***|||||*|*||||||||||||| targets:1124   CAACCGCCAGUAAAAAUUGAUUUU   1147 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033050J03, full insert sequence	NA	coding protein	psRNATarget