| ncRNA ID | novel_osa_miR54 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr12:6602222-6602346 [-] |
| Reference genome | IRGSP-1.0 |
| Source | SRR1738242;SRR1742993;SRR1743000;SRR2040408;SRR2857732;SRR3123652;SRR3234041;SRR5049779;SRR5049781;SRR5049785;SRR5049792;SRR1654490;SRR1738214;SRR1738224 |
| Length | 21 |
| Mature sequence(if miRNA) | 1 - CGUUCCCCAGCGGAGUCGCCA - 21 |
| Stem-loop(if miRNA) |
-- -- C AACAG CA - AUUUC CCACACGGCCAUGAAAA GC UUUUGCUGG GAGC GAUCGG ACA AUCA GG C || ||||||||| |||| |||||| ||| |||| || U CG GAGGCGACC CUUG UUAGCC UGU UAGU GC A AC CU C CUAGA -- A -GUCG UUAAAGCAAAUUAGAUC |
| Stem-loop sequence | GCUUUUGCUGGCGAGCAACAGGAUCGGCAACAAUCAAUUUCGGCCACACGGCCAUGAAAACUACUAGAUUAAACGAAAUUCGGCUGUGAUAUGUCCGAUUAGAUCGUUCCCCAGCGGAGUCGCCA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_015786830.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281275 (LOC107281275), mRNA | uncharacterized LOC107281275(LOC107281275) | coding protein | psRNATarget | |||||||||
| XM_015782436.1 |
|
3.0 | PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280856 (LOC107280856), mRNA | uncharacterized LOC107280856(LOC107280856) | coding protein | psRNATarget |