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BaseInfo

ncRNA ID	novel_osa_miR52
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:21449494-21449672 [-]
Reference genome	IRGSP-1.0
Source	SRR1738242;SRR1849773;SRR1849775;SRR2040380;SRR2040384;SRR2040385;SRR2040386;SRR2040387;SRR2040388;SRR2040389;SRR2040390;SRR2040392;SRR2040394;SRR2040395;SRR2040396;SRR2040397;SRR2040399;SRR2040400;SRR2040402;SRR2040405;SRR2040406;SRR2040408;SRR2040409;SRR3123652;SRR1738211;SRR1738217;SRR1738219;SRR1738221
Length	24
Mature sequence(if miRNA)	1 - AAACGUUGUAAGUAAAAACUCAAA - 24
Stem-loop(if miRNA)	--         -              U    C           UUUU     C    AUAAA  G GAAAAGUUAUGUUUAAAGUAUUGUAG   UGAGUUUUU CUUGCAACGUUUGA CACU GUCUUAUUUAA    UUUUG AAAU     AA U                          A   ||||||||| |||||||||||||| |||| |||||||||||    ||||| ||||     || |   ACUCAAAAA GAAUGUUGCAAAUU GUGA CAGAAUAAGUU    AAAAC UUUA     AU A                          U AA         U              U    A           UUUU     -    --AUA  - AAUAAAAUAAACACUGAAUGAAAUAA
Stem-loop sequence	UGAGUUUUUCUUGCAACGUUUGAUCACUCGUCUUAUUUAAUUUUUUUUGCAAAUAUAAAAAGUGAAAAGUUAUGUUUAAAGUAUUGUAGAUAAUAAAGUAAGUCACAAAUAAAAUAAAUAAUAAUUUCAAAAUUUUUUGAAUAAGACAAGUGUUUAAACGUUGUAAGUAAAAACUCAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK289013.1	ncRNA:24   AAACUCAAAAAUGAAUGUUGCAAA   1   |||||||||||||||=|||||||| targets:3847   UUUGAGUUUUUACUUGCAACGUUU   3870 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090089J03, full insert sequence	NA	coding protein	psRNATarget
AK288920.1	ncRNA:24   AAACUCAAAAAUGAAUGUUGCAAA   1   |||||||||||||||=|||||||| targets:3902   UUUGAGUUUUUACUUGCAACGUUU   3925 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090081L22, full insert sequence	NA	coding protein	psRNATarget
XM_015763075.1	ncRNA:24   AAACUCAAAAAUGAAUGUUGCAAA   1   |||||||||||=|||||||||||| targets:2835   UUUGAGUUUUUGCUUACAACGUUU   2858 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group protein trichome birefringence-like 28 (LOC4327430), transcript variant X3, mRNA	protein trichome birefringence-like 28(LOC4327430)	coding protein	psRNATarget
AK288652.1	ncRNA:24   AAACUCAAAAAUGAAUGUUGCAAA   1   |||||*||||||||||||||*||| targets:1195   UUUGAAUUUUUACUUACAACAUUU   1218 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090056N01, full insert sequence	NA	coding protein	psRNATarget