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BaseInfo

ncRNA ID	novel_osa_miR51
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:16057333-16057522 [+]
Reference genome	IRGSP-1.0
Source	SRR1738242;SRR2040382;SRR3123652
Length	24
Mature sequence(if miRNA)	1 - AAAACUUGGAAACUACCGUUGGAU - 24
Stem-loop(if miRNA)	--A                                         U                   A               C   UAAA    UAA    AAACUUGGAAACUACCGUUGGAUCGAGAAAUGGACGUCCGA AUUCGUCCACGUCACCAUG GUUAAAGUUUAACUC CAG    AUUU   C    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||    ||||    UUUGAACCUUUGAUGGCAACUUAGCUCUUUACCUGUAGGCU UAAGUAGGUGCAGUGGUAC CAAUUUUAAAUUGAG GUC    UGAG   U ACC                                         C                   C               C   UAAG    UAC
Stem-loop sequence	AAAACUUGGAAACUACCGUUGGAUCGAGAAAUGGACGUCCGAUAUUCGUCCACGUCACCAUGAGUUAAAGUUUAACUCCCAGUAAAAUUUUAACUCAUGAGUGAAUCUGCGAGUUAAAUUUUAACCCAUGGUGACGUGGAUGAAUCUCGGAUGUCCAUUUCUCGAUUCAACGGUAGUUUCCAAGUUUCCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK062635.1	ncRNA:24   UAGGUUGCCAUCAAAGGUUCAAAA   1   ||||||=||||||||=|||||||| targets:83   AUCCAAUGGUAGUUUUCAAGUUUU   106 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-105-D01, full insert sequence	NA	coding protein	psRNATarget
AK288582.1	ncRNA:24   UAGGUUGCCAUCAAAGGUUCAAAA   1   |||=|||||||||||||||||||* targets:217   AUCUAACGGUAGUUUCCAAGUUUC   240 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090049I19, full insert sequence	NA	coding protein	psRNATarget
AK288868.1	ncRNA:24   UAGGUUGCCAUCAAAGGUUCAAAA   1   |||||||||*|||||||||||||* targets:5554   AUCCAACGGAAGUUUCCAAGUUUG   5577 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090078E01, full insert sequence	NA	coding protein	psRNATarget
XM_015776882.1	ncRNA:24   UAGGUUGCCAUCAAAGGUUCAAAA   1   *|*||||**||||||||||||||* targets:670   UUGCAACAAUAGUUUCCAAGUUUG   693 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group phosphopantothenoylcysteine decarboxylase subunit VHS3 (LOC9271947), transcript variant X2, mRNA	phosphopantothenoylcysteine decarboxylase subunit VHS3(LOC9271947)	coding protein	psRNATarget