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BaseInfo

ncRNA ID novel_osa_miR49
Species Oryza sativa
Class miRNA
Genome position Chr12:26691607-26691805 [-]
Reference genome IRGSP-1.0
Source SRR1738242;SRR1849772;SRR2040401;SRR2040409;SRR3123652;SRR1738212;SRR1738216;SRR1738219
Length 24
Mature sequence(if miRNA) 176 - ACGUAGAUUACCGAUAAAACCGAU - 199
Stem-loop(if miRNA) --  G        C         G           C    A             C    A      U           C      ---A    C    UAC
  AC UAGAUUAC GAUAAAACC AUUCUAUAACC CUAG CUAUUUUGCGAGA GAAU UAAUGA GUAUAUUAAUC AUGAUU    GCGG UGAU   U
  || |||||||| ||||||||| ||||||||||| |||| ||||||||||||| |||| |||||| ||||||||||| ||||||    |||| ||||   G
  UG AUCUAAUG CUGUUUUGG UAAGGUAUUGG GAUC GAUAAAACGCUCU CUUA AUUACU CAUAUAAUUAG UACUAA    UGUC ACUA   U
UU  G        A         G           C    C             A    G      C           A      GCGA    -    CGA
Stem-loop sequence ACGUAGAUUACCGAUAAAACCGAUUCUAUAACCCCUAGACUAUUUUGCGAGACGAAUAUAAUGAUGUAUAUUAAUCCAUGAUUAGCGGCUGAUUACUGUAGCAUCACUGUAGCGAAUCAUAGAUUAAUAUACCUCAUUAGAUUCAUCUCGCAAAAUAGCCUAGCGGUUAUGGAAUGGGUUUUGUCAGUAAUCUAGGUUU