ncRNA ID | novel_osa_miR48 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr6:14282804-14283023 [-] |
Reference genome | IRGSP-1.0 |
Source | SRR1460508 |
Length | 27 |
Mature sequence(if miRNA) | 194 - GGAGUAUUAAACGUAGAUUACUGACAA - 220 |
Stem-loop(if miRNA) |
--                               C                 CUA                    C  G                  U  UACAG    -  U   GGAGUAUUAAACGUAGAUUACUGACAAAACC AUUCCAUAACCCCUAGG   GUUUUGCGAGACGAAUCUAA GA GUAUAUUAAUCCAUAAUU GC     UGAU GC A   ||||||||||||||||||||||||||||||| |||||||||||||||||   |||||||||||||||||||| || |||||||||||||||||| ||     |||| ||   CCUCAUAAUUUGCAUCUAAUGGCUGUUUUGG UAAGGUAUUGGGGAUCC   UAAAACGCUCUGUUUAGAUU CU CAUAUAAUUAGGUAUUAA CG     ACUA UG C AU                               C                 -AA                    A  A                  U  --CCG    A  A |
Stem-loop sequence | GGAGUAUUAAACGUAGAUUACUGACAAAACCCAUUCCAUAACCCCUAGGCUAGUUUUGCGAGACGAAUCUAACGAGGUAUAUUAAUCCAUAAUUUGCUACAGUGAUGCUACAGUAAUCAGCCGCUAAUUAUGGAUUAAUAUACAUCAUUAGAUUUGUCUCGCAAAAUAACCUAGGGGUUAUGGAAUCGGUUUUGUCGGUAAUCUACGUUUAAUACUCCUA |