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BaseInfo

ncRNA ID	novel_osa_miR45
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:2303334-2303483 [+]
Reference genome	IRGSP-1.0
Source	SRR1738242;SRR3123652
Length	22
Mature sequence(if miRNA)	1 - UUCUAUAACCUUGGACUAAUUC - 22
Stem-loop(if miRNA)	---   U    CCU    --     UC C    C    C               CA   CG   -   C  U  GA   U    UUC AUAA   UGGA  CUAAU  G GAGA GAAU UUUUGAGUCUAAUUA  CCA  AUU UGA AA GU  UGC A    ||| ||||   ||||  |||||  | |||| |||| |||||||||||||||  |||  ||| ||| || ||  |||    AAG UAUU   ACUU  GAUUA  C CUCU CUUA AAAAUUCGGAUUAAU  GGU  UAA ACU UU CA  AUG U UUA   -    --U    UC     GA A    A    -               UA   AU   U   U  -  -A   A
Stem-loop sequence	UUCUAUAACCUUGGACUAAUUCGCGAGACGAAUCUUUUGAGUCUAAUUACACCACGAUUUGACAAUGUGAUGCUAUAGUAAACUUUUCAUAAUUAUGGAUUAAUUAGGCUUAAAAAUUCAUCUCACAGAUUAGCUUUCAUUUAUGAAAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK287827.1	ncRNA:22   CUUAAUCAGGUUCCAAUAUCUU   1   ||||||||||||||||||=||| targets:2098   GAAUUAGUCCAAGGUUAUGGAA   2119 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065185G19, full insert sequence	NA	coding protein	psRNATarget
AK288948.1	ncRNA:22   CUUAAUCAGGUUCCAA-UAUCUU   1   ||||||||||||||||-|||||| targets:2756   GAAUUAGUCCAAGGUUUAUAGAA   2778 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090083I09, full insert sequence	NA	coding protein	psRNATarget
AK288737.1	ncRNA:22   CUUAAUCAGGUUCCAAUAUCUU   1   |||||||||||||*|||||||* targets:1492   GAAUUAGUCCAAGAUUAUAGAU   1513 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090063M20, full insert sequence	NA	coding protein	psRNATarget
AK109722.1	ncRNA:22   CUUAAUCAGGUUCCAAUAUCUU   1   **=||*|||||||*|||||||| targets:1681   AUGUUUGUCCAAGUUUAUAGAA   1702 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-146-B04, full insert sequence	NA	coding protein	psRNATarget