| ncRNA ID | ath-miR447a.2-3p |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr4:1528134-1528370 [-] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 15 - UAUGGAAGAAAUUGUAGUAUU - 35 |
| Stem-loop(if miRNA) |
UA UU A U A ACA A - UG U -C - GGUGUUUUUUUCUAGCCAACUC CAUUCU AUAUAUAAUACUAC UUUC UCCAU AA CCCCUU AUGUCGAGU AACGAAGCAUCU GUCCCC GUA UGUCUU GAGC UU C |||||| |||||||||||||| |||| ||||| || |||||| ||||||||| |||||||||||| |||||| ||| |||||| |||| || GUGAGA UAUAUAUUAUGAUG AAAG AGGUA UU GGGGAA UAUAGCUCA UUGUUUUGUAGA CAGGGG UAU ACAGAG CUUA GU A GC UU A U C GAA G G UU U UU U UUGUUACUAGUUGAGCUCUUGA |
| Stem-loop sequence | CAUUCUUAAUAUAUAAUACUACUUUUUCAUCCAUUAAACCCCUUACAAUGUCGAGUAAACGAAGCAUCUGUCCCCUGGUAUUGUCUUCGAGCUUGGUGUUUUUUUCUAGCCAACUCCAAGUUCUCGAGUUGAUCAUUGUUUGUAUUCUUGAGACAUUAUUUGGGGACGAGAUGUUUUGUUGACUCGAUAUAAGAAGGGGCUUUAUGGAAGAAAUUGUAGUAUUAUAUAUCGAGAGUG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NM_104346.3 |
|
3.0 | Arabidopsis thaliana autophagy 18h-like protein (ATG18H), mRNA | autophagy 18h-like protein(ATG18H) | coding protein | psRNATarget | |||||||||
| AF360222.1 |
|
3.0 | Arabidopsis thaliana unknown protein (At1g54710) mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| AY142626.1 |
|
3.0 | Arabidopsis thaliana unknown protein (At1g54710) mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| NM_001333664.1 |
|
3.0 | Arabidopsis thaliana autophagy 18h-like protein (ATG18H), partial mRNA | autophagy 18h-like protein(ATG18H) | coding protein | psRNATarget |
| 1 | PMID:15851028
"microRNA-directed phasing during trans-acting siRNA biogenesis in plants"; Allen E, Xie Z, Gustafson AM, Carrington JC; Cell. 121:207-221(2005). |
| 2 | PMID:16040653
"Expression of Arabidopsis MIRNA genes"; Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC; Plant Physiol. 138:2145-2154(2005). |
| 3 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
| 4 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |
| 5 | PMID:21357774
"MicroRNA activity in the Arabidopsis male germline"; Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD; J Exp Bot. 62:1611-1620(2011). |