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BaseInfo

ncRNA ID	novel_osa_miR39
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:13984610-13984713 [+]
Reference genome	IRGSP-1.0
Source	SRR1738242;SRR1738243;SRR1743002;SRR2857734;SRR2857735;SRR3123648;SRR3123652;SRR3123653;SRR1738235;SRR1738241
Length	24
Mature sequence(if miRNA)	81 - GAAUAUAGGCAAUGCUAGAAAGUC - 104
Stem-loop(if miRNA)	--               C         AA   UAA       C  --A    U   CUUUCUAGUAUUGUC AUAUUCAUA  GAU   AAUGAAU UA   AUAU C   ||||||||||||||| |||||||||  |||   ||||||| ||   ||||   GAAAGAUCGUAACGG UAUAAGUAU  CUA   UUACUUA AU   UGUA A CU               A         AC   CAA       C  CCG    U
Stem-loop sequence	CUUUCUAGUAUUGUCCAUAUUCAUAAAGAUUAAAAUGAAUCUAAAUAUUCAUAUGUGCCUACAUUCAUUAACAUCCAUAUGAAUAUAGGCAAUGCUAGAAAGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK318573.1	ncRNA:24   CUGAAAGAUCGUAACGGAUAUAAG   1   ||||||||||||||||=||||||| targets:308   GACUUUCUAGCAUUGCUUAUAUUC   331 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090044A16, full insert sequence	NA	coding protein	psRNATarget
AK067363.1	ncRNA:24   CUGAAAGAUCGUAACGGAUAUAAG   1   ||||||=||||||||=|||||||| targets:965   GACUUUUUAGCAUUGUCUAUAUUC   988 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013100G02, full insert sequence	NA	coding protein	psRNATarget
CT835788.1	ncRNA:24   CUGAAAGAUCGUAACGGAUAUAAG   1   ||||||||||=||||||||||||= targets:1188   GACUUUCUAGUAUUGCCUAUAUUU   1211 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN020A08, full insert sequence	NA	coding protein	psRNATarget
AK110958.1	ncRNA:24   CUGAAAGAUCGUAACGGAUAUAAG   1   |=||||||||||||||=||||||| targets:499   GGCUUUCUAGCAUUGCUUAUAUUC   522 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-174-A09, full insert sequence	NA	coding protein	psRNATarget
XM_015786027.1	ncRNA:24   CUGAAAGAUCGUAACGGAUAUAAG   1   |||*|||||||||||||||||||| targets:4279   GACCUUCUAGCAUUGCCUAUAUUC   4302 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group ABC transporter C family member 8 (LOC9267441), mRNA	ABC transporter C family member 8(LOC9267441)	coding protein	psRNATarget
CT836048.1	ncRNA:24   CUGAAAGAUCGUAACGGAUAUAAG   1   ||||||||||||||||||||||*| targets:447   GACUUUCUAGCAUUGCCUAUAUAC   470 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA023O09, full insert sequence	NA	coding protein	psRNATarget
XM_015758512.1	ncRNA:24   CUGAAAGAUCGUAACGGAUAUAAG   1   |||||||||||||||||||*|||= targets:1442   GACUUUCUAGCAUUGCCUACAUUU   1465 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group BTB/POZ and MATH domain-containing protein 1-like (LOC107279175), mRNA	BTB/POZ and MATH domain-containing protein 1-like(LOC107279175)	coding protein	psRNATarget
XM_015755953.1	ncRNA:24   CUGAAAGAUCGUAACGGAUAUAAG   1   ||=||||||*||||||=||||||| targets:504   GAUUUUCUAACAUUGCUUAUAUUC   527 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278908 (LOC107278908), mRNA	uncharacterized LOC107278908(LOC107278908)	coding protein	psRNATarget
AK072372.1	ncRNA:24   CUGAAAGAUCGUAACGGAUAUAAG   1   *|||||||||||||||*||||||= targets:679   CACUUUCUAGCAUUGCAUAUAUUU   702 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023068F06, full insert sequence	NA	coding protein	psRNATarget
AK120847.1	ncRNA:24   CUGAAAGAUCGUAACGGAUAUAAG   1   *|||||||||||||||*||||||= targets:524   CACUUUCUAGCAUUGCAUAUAUUU   547 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023023A10, full insert sequence	NA	coding protein	psRNATarget
AK288932.1	ncRNA:24   CUGAAAGAUCGUAACGGAUAUAAG   1   |||||||||*|||||||||*|||| targets:2973   GACUUUCUAACAUUGCCUACAUUC   2996 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090082H22, full insert sequence	NA	coding protein	psRNATarget
AK059715.1	ncRNA:24   CUGAAAGAUCGUAACGGAUAUAAG   1   |||||||||*|||||||*|||||| targets:32   GACUUUCUAACAUUGCCCAUAUUC   55 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-032-F10, full insert sequence	NA	coding protein	psRNATarget
AK241705.1	ncRNA:24   CUGAAAGAUCGUAACGGAUAUAAG   1   |*|*||=|||||||*||||||||| targets:3981   GUCAUUUUAGCAUUUCCUAUAUUC   4004 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065196L09, full insert sequence	NA	coding protein	psRNATarget