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BaseInfo

ncRNA ID	novel_osa_miR36
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:13772501-13772626 [+]
Reference genome	IRGSP-1.0
Source	SRR1738242;SRR3123652
Length	24
Mature sequence(if miRNA)	103 - AGAUUUGUCUCGCGGUUUUCAGGC - 126
Stem-loop(if miRNA)	--A        A               G          CU  A G      -   ---AAG   U    UGGAAAUC CGAGACGAAUCUUUU AGCCUAAUUA  CC U AUUAGC CAU      UGC A    |||||||| ||||||||||||||| ||||||||||  || | |||||| |||      |||    ACUUUUGG GCUCUGUUUAGAAAA UCGGAUUAAU  GG A UAAUCG GUA      AUG C CGG        C               A          UC  C G      U   CACCCA   A
Stem-loop sequence	AUGGAAAUCACGAGACGAAUCUUUUGAGCCUAAUUACUCCAUGAUUAGCCAUAAGUGCUACAGUAACCCACAUGUGCUAAUGACGGCUUAAUUAGGCUAAAAAGAUUUGUCUCGCGGUUUUCAGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288244.1	ncRNA:24   CGGACUUUUGGCGCUCUGUUUAGA   1   ||||||||||||||||||=||||| targets:1644   GCCUGAAAACCGCGAGACGAAUCU   1667 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090014C01, full insert sequence	NA	coding protein	psRNATarget
XM_015776798.1	ncRNA:24   CGGACUUUUGGCGCUCUGUUUAGA   1   |||||=||||||||||||=||||| targets:1894   GCCUGGAAACCGCGAGACGAAUCU   1917 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group U11/U12 small nuclear ribonucleoprotein 65 kDa protein (LOC4332713), transcript variant X1, mRNA	U11/U12 small nuclear ribonucleoprotein 65 kDa protein(LOC4332713)	coding protein	psRNATarget
XM_015761412.1	ncRNA:24   CGGACUUUUGGCGCUCUGUUUAGA   1   |=|||=||||||||||||=||||| targets:538   GUCUGGAAACCGCGAGACGAAUCU   561 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group nucleobase-ascorbate transporter 2 (LOC4325616), mRNA	nucleobase-ascorbate transporter 2(LOC4325616)	coding protein	psRNATarget
AK288308.1	ncRNA:24   CGGACUUUUGGCGCUCUGUUUAGA   1   ||*||||||=||||||||=||||| targets:367   GCAUGAAAAUCGCGAGACGAAUCU   390 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090020H07, full insert sequence	NA	coding protein	psRNATarget
AK288305.1	ncRNA:24   CGGACUUUUGGCGCUCUGUUUAGA   1   |=|*|*||||||||||||||||=| targets:455   GUCGGUAAACCGCGAGACAAAUUU   478 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090020F20, full insert sequence	NA	coding protein	psRNATarget
XM_015775044.1	ncRNA:24   CGGACUUUUGGCGCUCUGUUUAGA   1   *|*||*|||==||||||||||||| targets:1080   ACGUGUAAAUUGCGAGACAAAUCU   1103 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group two pore potassium channel a (LOC4334137), transcript variant X3, mRNA	two pore potassium channel a(LOC4334137)	coding protein	psRNATarget
XM_015775042.1	ncRNA:24   CGGACUUUUGGCGCUCUGUUUAGA   1   *|*||*|||==||||||||||||| targets:1080   ACGUGUAAAUUGCGAGACAAAUCU   1103 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group two pore potassium channel a (LOC4334137), transcript variant X1, mRNA	two pore potassium channel a(LOC4334137)	coding protein	psRNATarget
XM_015791314.1	ncRNA:24   CGGACUUUUGGCGCUCUGUUUAGA   1   *|*||*|||==||||||||||||| targets:1867   ACAUGUAAAUUGCGAGACAAAUCU   1890 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4343872 (LOC4343872), transcript variant X7, mRNA	uncharacterized LOC4343872(LOC4343872)	coding protein	psRNATarget