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BaseInfo

ncRNA ID	novel_osa_miR35
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:8379302-8379359 [+]
Reference genome	IRGSP-1.0
Source	SRR1738242;SRR1738243;SRR1743006;SRR2040388;SRR2040399;SRR2857736;SRR3123646;SRR3123648;SRR3123650;SRR3123651;SRR3123652;SRR3123653;SRR5351739;SRR5351740;SRR5351742;SRR1738228;SRR1738235;SRR1738239;SRR1738240;SRR1738241
Length	24
Mature sequence(if miRNA)	1 - ACCGGGACUAAAGAUAGCUCAGCC - 24
Stem-loop(if miRNA)	--       C       A      - -  G   ACCGGGA UAAAGAU GCUCAG C CG C   ||||||| ||||||| |||||| | ||   UGGCCCU AUUUCUA CGAGUC G GC C UU       U       C      U U  A
Stem-loop sequence	ACCGGGACUAAAGAUAGCUCAGCCGGCCACGUGUCUGAGCCAUCUUUAUUCCCGGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK242216.1	ncRNA:24   CC-GA---CU--CGAUAGAAAUCAGGGCCA   1   ||-||---||--|||||||||||||||||| targets:626   GGACUAAAGAUCGCUAUCUUUAGUCCCGGU   655 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J075172F09, full insert sequence	NA	coding protein	psRNATarget
AK241906.1	ncRNA:24   CC-GA---CU--CGAUAGAAAUCAGGGCCA   1   ||-||---||--|||||||||||||||||| targets:1695   GGACUAAAGAUCGCUAUCUUUAGUCCCGGU   1724 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J075049G22, full insert sequence	NA	coding protein	psRNATarget
XM_015758676.1	ncRNA:24   CCGA---CU--CGAUAGAAAUCAGGGCCA   1   |*||---||--|||||||||||||||||| targets:1936   GACUAAAGAUCGCUAUCUUUAGUCCCGGU   1964 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group polyubiquitin-like (LOC107279205), mRNA	polyubiquitin-like(LOC107279205)	coding protein	psRNATarget
AK288424.1	ncRNA:24   CC-GA---CUCGAUAGAAAUCAGGGCCA   1   ||-||---||*||||=|||||||||||| targets:2277   GGACUAAAGAUCUAUUUUUAGUCCCGGU   2304 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
AK288377.1	ncRNA:24   CCGACUCGAUAGAAAUCAGGGCCA   1   *****|||*||||||||||||||| targets:1368   AAGAUAGCGAUCUUUAGUCCCGGU   1391 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090026K06, full insert sequence	NA	coding protein	psRNATarget
AK288796.1	ncRNA:24   CC-GA---CUCGAUAGAAAUCAGGGCCA   1   ||-||---||*|*||||||||||||||| targets:1818   GGACUAAAGAUCGAUCUUUAGUCCCGGU   1845 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
AK288167.1	ncRNA:24   CC-GA---CUCGAUAGAAAUCAGGGCCA   1   ||-||---||*|*||||||||||||||* targets:1771   GGACUAAAGAUCGAUCUUUAGUCCCGGA   1798 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090002K22, full insert sequence	NA	coding protein	psRNATarget