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BaseInfo

ncRNA ID	novel_osa_miR28
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:5529378-5529484 [+]
Reference genome	IRGSP-1.0
Source	SRR1738242;SRR1849773;SRR3123652;SRR1738217
Length	24
Mature sequence(if miRNA)	1 - ACAACUCCACUCUAGACCCAACUC - 24
Stem-loop(if miRNA)	--                  C    C  AU   A         A  UGGAG    A   ACAACUCCACUCUAGACC AACU CU  AGC AAAUUUAGG GU     CUGU C   |||||||||||||||||| |||| ||  ||| ||||||||| ||     |||| C   UGUUGAGGUGAGGUCUGG UUGA GA  UCG UUUAAAUCC CG     GACA A GG                  A    A  CC   A         -  -----    A
Stem-loop sequence	ACAACUCCACUCUAGACCCAACUCCUAUAGCAAAAUUUAGGAGUUGGAGCUGUACCAAACAGGCCCUAAAUUUAGCUCCAGAAGUUAGGUCUGGAGUGGAGUUGUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK101220.1	ncRNA:24   CUCAACCCAGAUCUCACCUCAACA   1   |||||||||||=|||||||||||| targets:1075   GAGUUGGGUCUGGAGUGGAGUUGU   1098 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033031C20, full insert sequence	NA	coding protein	psRNATarget
XM_015768148.1	ncRNA:24   CUCAACCCAGAUCUCACCUCAACA   1   |||||||||||=|||||||||||| targets:1104   GAGUUGGGUCUGGAGUGGAGUUGU   1127 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group chorismate mutase 2 (LOC4328508), mRNA	chorismate mutase 2(LOC4328508)	coding protein	psRNATarget
XM_015773116.1	ncRNA:24   CUCAACCCAGAUCUCACCUCAACA   1   |||||||||=|=|||||||||||| targets:2311   GAGUUGGGUUUGGAGUGGAGUUGU   2334 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g56690, mitochondrial (LOC9272128), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At1g56690, mitochondrial(LOC9272128)	coding protein	psRNATarget
XM_015773115.1	ncRNA:24   CUCAACCCAGAUCUCACCUCAACA   1   |||||||||=|=|||||||||||| targets:2368   GAGUUGGGUUUGGAGUGGAGUUGU   2391 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g56690, mitochondrial (LOC9272128), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At1g56690, mitochondrial(LOC9272128)	coding protein	psRNATarget
AK070002.1	ncRNA:24   CUCAACCCAGAUCUCACCUCAACA   1   ||||||*||||=|||||||||||| targets:2060   GAGUUGAGUCUGGAGUGGAGUUGU   2083 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023034C21, full insert sequence	NA	coding protein	psRNATarget