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BaseInfo

ncRNA ID	novel_osa_miR25
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:6149827-6149881 [-]
Reference genome	IRGSP-1.0
Source	SRR1738242;SRR1738243;SRR1460508;SRR1738244;SRR1742988;SRR1742989;SRR1742990;SRR1742991;SRR1742992;SRR1742993;SRR1742994;SRR1742995;SRR1742996;SRR1743000;SRR1743002;SRR1743006;SRR1849767;SRR2097778;SRR2099428;SRR2099436;SRR2099568;SRR3123630;SRR3123645;SRR3123646;SRR3123648;SRR3123650;SRR3123651;SRR3123652;SRR3123653;SRR3234041;SRR3234043;SRR3234044;SRR3234045;SRR4407953;SRR4407960;SRR5049779;SRR5049780;SRR5049781;SRR5049782;SRR5049783;SRR5049784;SRR5049785;SRR5049786;SRR5049787;SRR5049788;SRR5049789;SRR5049790;SRR5049792;SRR5049793;SRR1609312;SRR1609313;SRR1609315;SRR1609317;SRR1654490;SRR1654491;SRR1738209;SRR1738210;SRR1738211;SRR1738214;SRR1738216;SRR1738217;SRR1738219;SRR1738221;SRR1738222;SRR1738223;SRR1738225;SRR1738226;SRR1738227;SRR1738228;SRR1738235;SRR1738237;SRR1738239;SRR1738240;SRR1738241
Length	19
Mature sequence(if miRNA)	37 - UAACCUGGCUCUGAUACCA - 55
Stem-loop(if miRNA)	---U       CUC    A   -UU    G     AACCUGG   UGAU CCA   GAUA G     |||||||   |||| |||   ||||     UUGGAUC   ACUA GGU   CUGU G AGAU       --C    -   UAU    U
Stem-loop sequence	UAACCUGGCUCUGAUACCAUUGAUAGGGUUGUCUAUUGGAUCACCUAGGUUUAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK103785.1	ncRNA:19   ACCAUAGUCUCGGUCCAAU   1   ||||||||||||=|||||= targets:24   UGGUAUCAGAGCUAGGUUG   42 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033145I11, full insert sequence	NA	coding protein	psRNATarget
XM_015794883.1	ncRNA:19   ACCAUAGUCUCG-GUCCAAU   1   ||||||||||||-||||||| targets:982   UGGUAUCAGAGCUCAGGUUA   1001 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107282066 (LOC107282066), mRNA	uncharacterized LOC107282066(LOC107282066)	coding protein	psRNATarget
AK106958.1	ncRNA:19   ACCAUAGUCUCGGUCCAAU   1   ||||||||||||*|||||* targets:132   UGGUAUCAGAGCAAGGUUU   150 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-119-E11, full insert sequence	NA	coding protein	psRNATarget
XM_015783452.1	ncRNA:19   ACCAUAGUCUCGGUCCAAU   1   ||||||||||||*|||||* targets:132   UGGUAUCAGAGCAAGGUUU   150 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266127 (LOC9266127), transcript variant X2, mRNA	uncharacterized LOC9266127(LOC9266127)	coding protein	psRNATarget
AK100359.1	ncRNA:19   ACCAUAGUCUCGGUCCAAU   1   ||||||||||||*|||||* targets:133   UGGUAUCAGAGCAAGGUUU   151 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023083K23, full insert sequence	NA	coding protein	psRNATarget
AK109539.1	ncRNA:19   ACCAUAGUCUCGGUCCAAU   1   ||||||||||||*|||||* targets:134   UGGUAUCAGAGCAAGGUUU   152 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-119-G07, full insert sequence	NA	coding protein	psRNATarget
XM_015783451.1	ncRNA:19   ACCAUAGUCUCGGUCCAAU   1   ||||||||||||*|||||* targets:134   UGGUAUCAGAGCAAGGUUU   152 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266127 (LOC9266127), transcript variant X1, mRNA	uncharacterized LOC9266127(LOC9266127)	coding protein	psRNATarget
AK120806.1	ncRNA:19   ACCAUAGUCUCGGUCCAAU   1   ||||||||||||*|||||* targets:141   UGGUAUCAGAGCAAGGUUU   159 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023013I10, full insert sequence	NA	coding protein	psRNATarget
XM_015764770.1	ncRNA:19   ACCAUAGUCUCGGUCCAAU   1   **|*||||||||||||||| targets:15   AAGCAUCAGAGCCAGGUUA   33 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g80270, mitochondrial (LOC4351621), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At1g80270, mitochondrial(LOC4351621)	coding protein	psRNATarget