| ncRNA ID | ath-miR447c-3p |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr4:1523306-1523503 [-] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 22 |
| Mature sequence(if miRNA) | 57 - UUGGGGACGACAUCUUUUGUUG - 78 |
| Stem-loop(if miRNA) |
A C U UU A G U G ACA A C - G U CU G CUU U CAUUCUU AUAUA AAUACU C UUUC U CAU AA CCCCUU AUGUCGAGU AACAAAG AUGU GUCC C AAUAUUGU UC AG GGUAU U ||||||| ||||| |||||| | |||| | ||| || |||||| ||||||||| ||||||| |||| |||| | |||||||| || || ||||| GUAAGAA UAUAU UUAUGA G AAAG A GUG UU GGGGAA UAUAGCUCA UUGUUUU UACA CAGG G UUAUGGCA AG UC UUAUG U C A U UU A G U G GAA G C G G U -U - --- U |
| Stem-loop sequence | CAUUCUUAAUAUACAAUACUUCUUUUUCAUGCAUUAAGCCCCUUACAAUGUCGAGUAAACAAAGCAUGUGUCCGCUAAUAUUGUCUUCGAGCUUGGUAUUUUUGUAUUCUGAUACGGUAUUUGGGGACGACAUCUUUUGUUGACUCGAUAUAAGAAGGGGGUUUGUGGAAGAAAUUGUAGUAUUAUAUAUCAAGAAUG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| FJ591134.1 |
|
2.5 | Arabidopsis thaliana type-1 phosphatidic acid phosphohydrolase 2 mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| NM_001203528.2 |
|
2.5 | Arabidopsis thaliana phosphatidic acid phosphohydrolase 2 (PAH2), mRNA | phosphatidic acid phosphohydrolase 2(PAH2) | coding protein | psRNATarget | |||||||||
| NM_123652.3 |
|
2.5 | Arabidopsis thaliana phosphatidic acid phosphohydrolase 2 (PAH2), mRNA | phosphatidic acid phosphohydrolase 2(PAH2) | coding protein | psRNATarget | |||||||||
| NM_001344465.1 |
|
2.5 | Arabidopsis thaliana phosphatidic acid phosphohydrolase 2 (PAH2), mRNA | phosphatidic acid phosphohydrolase 2(PAH2) | coding protein | psRNATarget |
| 1 | PMID:15851028
"microRNA-directed phasing during trans-acting siRNA biogenesis in plants"; Allen E, Xie Z, Gustafson AM, Carrington JC; Cell. 121:207-221(2005). |
| 2 | PMID:16040653
"Expression of Arabidopsis MIRNA genes"; Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC; Plant Physiol. 138:2145-2154(2005). |
| 3 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
| 4 | PMID:21357774
"MicroRNA activity in the Arabidopsis male germline"; Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD; J Exp Bot. 62:1611-1620(2011). |