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BaseInfo

ncRNA ID ath-miR826b
Species Arabidopsis thaliana
Class miRNA
Genome position chr4:1340521-1340614 [-]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 62 - UGGUUUUGGACACGUGAAAAU - 82
Stem-loop(if miRNA)      G   A            C            ACUUU   CAGC
UAUGA AUA UCUGGUUUUGGA ACGUGAAAAUUA     UCA    A
||||| ||| |||||||||||| ||||||||||||     |||    G
AUACU UAU AGGCCAAAACCU UGCACUUUUAGU     AGU    C
     A   C            A            ---AU   AUAA
Stem-loop sequence UAUGAGAUAAUCUGGUUUUGGACACGUGAAAAUUAACUUUUCACAGCAGCAAUAUGAUAUGAUUUUCACGUAUCCAAAACCGGACUAUAUCAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AF418241.1
ncRNA:21   UAAAAGUGCACAGGUUUUGGU   1
  ||||||||||||||||||||=
targets:1162   AUUUUCACGUGUCCAAAACCG   1182

1.0 Arabidopsis thaliana Col-0 2-oxoglutarate-dependent dioxygenase (AOP2) pseudogene, mRNA sequence NA coding protein psRNATarget
AF418240.1
ncRNA:21   UAAAAGUGCACAGGUUUUGGU   1
  ||||||||||||||||||||=
targets:1196   AUUUUCACGUGUCCAAAACCG   1216

1.0 Arabidopsis thaliana Ler 2-oxoglutarate-dependent dioxygenase (AOP2) mRNA, complete cds NA coding protein psRNATarget
AF417858.1
ncRNA:21   UAAAAGUGCACAGGUUUUGGU   1
  ||||||||||||||||||||=
targets:1120   AUUUUCACGUGUCCAAAACCG   1140

1.0 Arabidopsis thaliana AOP2 mRNA, complete cds NA coding protein psRNATarget
AF418221.1
ncRNA:21   UAAAAGUGCACAGGUUUUGGU   1
  ||||||||||||||||||||=
targets:1090   AUUUUCACGUGUCCAAAACCG   1110

1.0 Arabidopsis thaliana Yo-0 2-oxoglutarate-dependent dioxygenase (AOP2) mRNA, partial cds NA coding protein psRNATarget
AF418223.1
ncRNA:21   UAAAAGUGCACAGGUUUUGGU   1
  ||||||||||||||||||||=
targets:1087   AUUUUCACGUGUCCAAAACCG   1107

1.0 Arabidopsis thaliana Tac 2-oxoglutarate-dependent dioxygenase (AOP2) mRNA, partial cds NA coding protein psRNATarget
AF418238.1
ncRNA:21   UAAAAGUGCACAGGUUUUGGU   1
  ||||||||||||||||||||=
targets:1086   AUUUUCACGUGUCCAAAACCG   1106

1.0 Arabidopsis thaliana Ei-2 2-oxoglutarate-dependent dioxygenase (AOP2) mRNA, partial cds NA coding protein psRNATarget
AF418236.1
ncRNA:21   UAAAAGUGCACAGGUUUUGGU   1
  ||||||||||||||||||||=
targets:1090   AUUUUCACGUGUCCAAAACCG   1110

1.0 Arabidopsis thaliana Shakdara 2-oxoglutarate-dependent dioxygenase (AOP2) mRNA, partial cds NA coding protein psRNATarget
AF418222.1
ncRNA:21   UAAAAGUGCACAGGUUUUGGU   1
  ||||||||||||||||||||=
targets:1088   AUUUUCACGUGUCCAAAACCG   1108

1.0 Arabidopsis thaliana Di-1 2-oxoglutarate-dependent dioxygenase (AOP2) pseudogene, mRNA sequence NA coding protein psRNATarget
AF418237.1
ncRNA:21   UAAAAGUGCACAGGUUUUGGU   1
  ||||||||||||||||||||=
targets:1086   AUUUUCACGUGUCCAAAACCG   1106

1.0 Arabidopsis thaliana Cnt-1 2-oxoglutarate-dependent dioxygenase (AOP2) mRNA, partial cds NA coding protein psRNATarget
AF418231.1
ncRNA:21   UAAAAGUGCACAGGUUUUGGU   1
  ||||||||||||||||||||=
targets:1069   AUUUUCACGUGUCCAAAACCG   1089

1.0 Arabidopsis thaliana Kashmiri 2-oxoglutarate-dependent dioxygenase (AOP2) mRNA, partial cds NA coding protein psRNATarget
AF418229.1
ncRNA:21   UAAAAGUGCACAGGUUUUGGU   1
  ||||||||||||||||||||=
targets:1060   AUUUUCACGUGUCCAAAACCG   1080

1.0 Arabidopsis thaliana Mt-0 2-oxoglutarate-dependent dioxygenase (AOP2) mRNA, partial cds NA coding protein psRNATarget
AF418227.1
ncRNA:21   UAAAAGUGCACAGGUUUUGGU   1
  ||||||||||||||||||||=
targets:1059   AUUUUCACGUGUCCAAAACCG   1079

1.0 Arabidopsis thaliana Sorbo 2-oxoglutarate-dependent dioxygenase (AOP2) mRNA, partial cds NA coding protein psRNATarget
AF418225.1
ncRNA:21   UAAAAGUGCACAGGUUUUGGU   1
  ||||||||||||||||||||=
targets:1061   AUUUUCACGUGUCCAAAACCG   1081

1.0 Arabidopsis thaliana Pa 2-oxoglutarate-dependent dioxygenase (AOP2) mRNA, partial cds NA coding protein psRNATarget
AF418228.1
ncRNA:21   UAAAAGUGCACAGGUUUUGGU   1
  ||||||||||||||||||||=
targets:1059   AUUUUCACGUGUCCAAAACCG   1079

1.0 Arabidopsis thaliana Ema-1 2-oxoglutarate-dependent dioxygenase (AOP2) mRNA, partial cds NA coding protein psRNATarget
AF418224.1
ncRNA:21   UAAAAGUGCACAGGUUUUGGU   1
  ||||||||||||||||||||=
targets:1056   AUUUUCACGUGUCCAAAACCG   1076

1.0 Arabidopsis thaliana Pei 2-oxoglutarate-dependent dioxygenase (AOP2) pseudogene, mRNA sequence NA coding protein psRNATarget
AF418233.1
ncRNA:21   UAAAAGUGCACAGGUUUUGGU   1
  ||||||||||||||||||||=
targets:1066   AUUUUCACGUGUCCAAAACCG   1086

1.0 Arabidopsis thaliana Hodja 2-oxoglutarate-dependent dioxygenase (AOP2) mRNA, partial cds NA coding protein psRNATarget
AF418234.1
ncRNA:21   UAAAAGUGCACAGGUUUUGGU   1
  ||||||||||||||||||||=
targets:1062   AUUUUCACGUGUCCAAAACCG   1082

1.0 Arabidopsis thaliana Kondara 2-oxoglutarate-dependent dioxygenase (AOP2) mRNA, partial cds NA coding protein psRNATarget
AF418235.1
ncRNA:21   UAAAAGUGCACAGGUUUUGGU   1
  ||||||||||||||||||||=
targets:1028   AUUUUCACGUGUCCAAAACCG   1048

1.0 Arabidopsis thaliana Per-1 2-oxoglutarate-dependent dioxygenase (AOP2) mRNA, partial cds NA coding protein psRNATarget
AF418230.1
ncRNA:21   UAAAAGUGCACAGGUUUUGGU   1
  ||||||||||||||||||||=
targets:1023   AUUUUCACGUGUCCAAAACCG   1043

1.0 Arabidopsis thaliana Mh-0 2-oxoglutarate-dependent dioxygenase (AOP2) pseudogene, mRNA sequence NA coding protein psRNATarget
AF418226.1
ncRNA:21   UAAAAGUGCACAGGUUUUGGU   1
  ||||||||||||||||||||=
targets:1023   AUUUUCACGUGUCCAAAACCG   1043

1.0 Arabidopsis thaliana Ma-0 2-oxoglutarate-dependent dioxygenase (AOP2) pseudogene, mRNA sequence NA coding protein psRNATarget
AF418232.1
ncRNA:21   UAAAAGUGCACAGGUUUUGGU   1
  ||||||||||||||||||||=
targets:1036   AUUUUCACGUGUCCAAAACCG   1056

1.0 Arabidopsis thaliana Aa-0 2-oxoglutarate-dependent dioxygenase (AOP2) mRNA, partial cds NA coding protein psRNATarget
BT029463.1
ncRNA:21   UAAAAGUGCACAGGUUUUGGU   1
  ||||||||||||||||||||=
targets:601   AUUUUCACGUGUCCAAAACCG   621

1.0 Arabidopsis thaliana At4g03060 mRNA, complete cds NA coding protein psRNATarget
BX828898.1
ncRNA:21   UAAAAGUGCACAGGUUUUGGU   1
  ||||||||||*|||||||||=
targets:284   AUUUUCACGUAUCCAAAACCG   304

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL48ZG11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget

Reference

1 PMID:24367020
"Two young MicroRNAs originating from target duplication mediate nitrogen starvation adaptation via regulation of glucosinolate synthesis in Arabidopsis thaliana";
He H, Liang G, Li Y, Wang F, Yu D;
Plant Physiol. 164:853-865(2014).
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