ncRNA ID | novel_lus_miR333 |
Species | Linum usitatissimum |
Class | miRNA |
Genome position | scaffold866:342644-342877 [+] |
Reference genome | Lusitatissimum_200_BGIv1.0 |
Source | SRR2996371 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AAAUGGGCUAAUAUUUGACAUGUA - 24 |
Stem-loop(if miRNA) |
--    G GC  A                          -    CAUUG        C    -UUAA     UC       A  UAC     --G      A     UC   ACAUCAUG   AAAU G  UA UAUUUGACAUGUAUGUUGGGAAUGGC UAAA     AGGUUUCA CAUG     GCCCU  AAAUAAU GG   AUGAA   UUAGAU AUAUU  UUC        A   |||| |  || |||||||||||||||||||||||||| ||||     |||||||| ||||     |||||  ||||||| ||   |||||   |||||| |||||  |||   UUUA C  AU AUAAACUGUACGUACAACCUUUAUUG AUUU     UUCAAAGU GUAU     UGGGA  UUUAUUA CC   UACUU   AAUUUA UAUAA  GAG        A AG    G UA  C                          U    -UCGA        A    UACUG     -U       A  UAA     AAA      G     UU   CUAUAACA |
Stem-loop sequence | AAAUGGGCUAAUAUUUGACAUGUAUGUUGGGAAUGGCUAAACAUUGAGGUUUCACCAUGUUAAGCCCUUCAAAUAAUAGGUACAUGAAGUUAGAUAAUAUUUCUUCACAUCAUGAAACAAUAUCGAGUUAAUAUGAUUUAAAAAUUCAUAAUCCAAUUAUUUUAGGGUGUCAUUAUGAUGAAACUUAGCUUUUAUGUUAUUUCCAACAUGCAUGUCAAAUACUAAUCGAUUUGA |