Search result

BaseInfo

ncRNA ID novel_lus_miR333
Species Linum usitatissimum
Class miRNA
Genome position scaffold866:342644-342877 [+]
Reference genome Lusitatissimum_200_BGIv1.0
Source SRR2996371
Length 24
Mature sequence(if miRNA) 1 - AAAUGGGCUAAUAUUUGACAUGUA - 24
Stem-loop(if miRNA) --    G GC  A                          -    CAUUG        C    -UUAA     UC       A  UAC     --G      A     UC   ACAUCAUG
  AAAU G  UA UAUUUGACAUGUAUGUUGGGAAUGGC UAAA     AGGUUUCA CAUG     GCCCU  AAAUAAU GG   AUGAA   UUAGAU AUAUU  UUC        A
  |||| |  || |||||||||||||||||||||||||| ||||     |||||||| ||||     |||||  ||||||| ||   |||||   |||||| |||||  |||
  UUUA C  AU AUAAACUGUACGUACAACCUUUAUUG AUUU     UUCAAAGU GUAU     UGGGA  UUUAUUA CC   UACUU   AAUUUA UAUAA  GAG        A
AG    G UA  C                          U    -UCGA        A    UACUG     -U       A  UAA     AAA      G     UU   CUAUAACA
Stem-loop sequence AAAUGGGCUAAUAUUUGACAUGUAUGUUGGGAAUGGCUAAACAUUGAGGUUUCACCAUGUUAAGCCCUUCAAAUAAUAGGUACAUGAAGUUAGAUAAUAUUUCUUCACAUCAUGAAACAAUAUCGAGUUAAUAUGAUUUAAAAAUUCAUAAUCCAAUUAUUUUAGGGUGUCAUUAUGAUGAAACUUAGCUUUUAUGUUAUUUCCAACAUGCAUGUCAAAUACUAAUCGAUUUGA