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BaseInfo

ncRNA ID novel_lus_miR142
Species Linum usitatissimum
Class miRNA
Genome position scaffold31:23745-23947 [+]
Reference genome Lusitatissimum_200_BGIv1.0
Source SRR2996370
Length 24
Mature sequence(if miRNA) 1 - AUUUGACAUGUAUGUUGGGAAUGA - 24
Stem-loop(if miRNA) --    G            GG      -C         UAU  CGC      -AA   -  UCAAAUA  A   U         A   AAAU         AACAUUA
  AUUU ACAUGUAUGUUG  AAUGAC  AAAAAUCGA   GU   CAUUAU   GCC CU       AU GUC AAUGAAGUU AAA    AUUUUGUUC       A
  |||| ||||||||||||  ||||||  |||||||||   ||   ||||||   ||| ||       || ||| ||||||||| |||    |||||||||       U
  UAAA UGUACGUACAAC  UUACUG  UUUUUAGUU   CA   GUAAUA   UGG GA       UA CAG UUAUUUCAA UUU    UAAAACGAG       A
UA    G            UU      AU         ---  -AA      CCA   A  -------  C   U         C   GAGU         CCACAAU
Stem-loop sequence AUUUGACAUGUAUGUUGGGAAUGACCAAAAAUCGAUAUGUCGCCAUUAUAAGCCCUUCAAAUAAUAGUCUAAUGAAGUUAAAAAAAUAUUUUGUUCAACAUUAAUAUAACACCGAGCAAAAUUGAGUUUCAACUUUAUUUGACCAUAGAGGUACCAUAAUGAAACUUGAUUUUUUAGUCAUUUUCAACAUGCAUGUGAAAUAU