ncRNA ID | ath-miR5635d |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr4:1023912-1024149 [+] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 166 - UGUUAAGGAGUGUUAACGGUG - 186 |
Stem-loop(if miRNA) |
A                  C     G           A         C        A                  U           GUAA   ACAACUGUUUUUGUCCUUAAACCAA  GUUGACUUCUAAUUUAAC UAUAA UUAUCGUUGAC CGGCCAAAU GACUCACC UUAACACUUCUUAACAGC CUCCUAACAGC    CUA                         C  |||||||||||||||||| ||||| ||||||||||| ||||||||| |||||||| |||||||||||||||||| |||||||||||    |||                         G  CAACUGAAGAUUAAAUUG AUAUU AAUAGCAACUG GUCGGUUUA CUGAGUGG AAUUGUGAGGAAUUGUCG GAGGAUUGUCG    CAA                         A A                  U     A           G         U        C                  C           ---G   UGUUUUGUACCGGAUUGUCGGCAAU |
Stem-loop sequence | AGUUGACUUCUAAUUUAACCUAUAAGUUAUCGUUGACACGGCCAAAUCGACUCACCAUUAACACUUCUUAACAGCUCUCCUAACAGCGUAACUAACAACUGUUUUUGUCCUUAAACCAACGAUAACGGCUGUUAGGCCAUGUUUUGUAACGGCUGUUAGGAGCGCUGUUAAGGAGUGUUAACGGUGAGUCUAUUUGGCUGGGUCAACGAUAAAUUAUAUGUUAAAUUAGAAGUCAACA |
1 | PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012). |