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BaseInfo

ncRNA ID ath-miR5635d
Species Arabidopsis thaliana
Class miRNA
Genome position chr4:1023912-1024149 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 166 - UGUUAAGGAGUGUUAACGGUG - 186
Stem-loop(if miRNA) A                  C     G           A         C        A                  U           GUAA   ACAACUGUUUUUGUCCUUAAACCAA
 GUUGACUUCUAAUUUAAC UAUAA UUAUCGUUGAC CGGCCAAAU GACUCACC UUAACACUUCUUAACAGC CUCCUAACAGC    CUA                         C
 |||||||||||||||||| ||||| ||||||||||| ||||||||| |||||||| |||||||||||||||||| |||||||||||    |||                         G
 CAACUGAAGAUUAAAUUG AUAUU AAUAGCAACUG GUCGGUUUA CUGAGUGG AAUUGUGAGGAAUUGUCG GAGGAUUGUCG    CAA                         A
A                  U     A           G         U        C                  C           ---G   UGUUUUGUACCGGAUUGUCGGCAAU
Stem-loop sequence AGUUGACUUCUAAUUUAACCUAUAAGUUAUCGUUGACACGGCCAAAUCGACUCACCAUUAACACUUCUUAACAGCUCUCCUAACAGCGUAACUAACAACUGUUUUUGUCCUUAAACCAACGAUAACGGCUGUUAGGCCAUGUUUUGUAACGGCUGUUAGGAGCGCUGUUAAGGAGUGUUAACGGUGAGUCUAUUUGGCUGGGUCAACGAUAAAUUAUAUGUUAAAUUAGAAGUCAACA

Reference

1 PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis";
Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN;
Genome Res. 22:163-176(2012).