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BaseInfo

ncRNA ID novel_lus_miR78
Species Linum usitatissimum
Class miRNA
Genome position scaffold172:239554-239714 [-]
Reference genome Lusitatissimum_200_BGIv1.0
Source SRR2996370
Length 24
Mature sequence(if miRNA) 1 - GACAUGCAUGUUGGGAAUAACUAA - 24
Stem-loop(if miRNA) --  C                  AAUA   U        --         UGAC      UUA G     G    A      U
  AG UAUUUCCAACAUGCAUGU    UAU AGUCGAUU  AGAAAAUUU    AUUUUC   U AAAAU GUCA UUUCUA A
  || ||||||||||||||||||    ||| ||||||||  |||||||||    ||||||   | ||||| |||| ||||||
  UC AUAAGGGUUGUACGUACA    AUA UCGGUUAA  UUUUUUAAG    UAAAAG   A UUUUA CAGU AAAGGU G
AA  A                  GUUC   C        AU         ---U      UAC G     A    A      U
Stem-loop sequence AGCUAUUUCCAACAUGCAUGUAAUAUAUUAGUCGAUUAGAAAAUUUUGACAUUUUCUUAUGAAAAUGGUCAAUUUCUAUAGUUGGAAAAUGACAAUUUUGACAUGAAAAUUGAAUUUUUUUAAAUUGGCUCAUACUUGACAUGCAUGUUGGGAAUAACUAA