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BaseInfo

ncRNA ID novel_lus_miR49
Species Linum usitatissimum
Class miRNA
Genome position scaffold1334:229-365 [+]
Reference genome Lusitatissimum_200_BGIv1.0
Source SRR2996370
Length 24
Mature sequence(if miRNA) 114 - AAUUGACUAAUAUUUGGCAGGCAU - 137
Stem-loop(if miRNA) --  UC  A         C       A   U   GA      CU   U         CAUUG   U  GUU
  GC  GU AAAUAUUAG CGAUUUG AAU UUU  AAUUUU  UGU AAAAUGGUU     CCA AG   A
  ||  || ||||||||| ||||||| ||| |||  ||||||  ||| |||||||||     ||| ||
  CG  CG UUUAUAAUC GUUAAAC UUA AAA  UUAAAA  ACA UUUUACUAA     GGU UC   A
UA  GA  G         A       G   C   -G      AC   C         ----A   U  ACU
Stem-loop sequence GCUCGUAAAAUAUUAGCCGAUUUGAAAUUUUUGAAAUUUUCUUGUUAAAAUGGUUCAUUGCCAUAGGUUAAUCACUUUGGAAAUCAUUUUCACACAAAAAUUGAAACAUUGCAAAUUGACUAAUAUUUGGCAGGCAU