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BaseInfo

ncRNA ID novel_lus_miR47
Species Linum usitatissimum
Class miRNA
Genome position scaffold132:6589-6761 [+]
Reference genome Lusitatissimum_200_BGIv1.0
Source SRR2996370
Length 24
Mature sequence(if miRNA) 150 - GGCAUACAUGUUGGAAAUGACUAA - 173
Stem-loop(if miRNA) ---A   A  A        C      A      A           U    -U      CA   C       G    -        U  U
    UCA UU CCAACAUG AUGUCA AUAUUA CUAAUUUGAAA UUUU  AAUUUU  UGU AAAAUUG UCAA UUUCCAUG GU A
    ||| || |||||||| |||||| |||||| ||||||||||| ||||  ||||||  ||| ||||||| |||| |||||||| || U
    AGU AA GGUUGUAC UACGGU UAUAAU GGUUAAACUUU AAAA  UUGAAA  ACA UUUUAAU AGUU AAAGGUAU CA A
AAUC   A  -        A      G      C           U    CU      UA   C       -    U        -  A
Stem-loop sequence AUCAAUUACCAACAUGCAUGUCAAAUAUUAACUAAUUUGAAAUUUUUUAAUUUUCAUGUCAAAAUUGGUCAAUUUCCAUGUGUUAUAAACUAUGGAAAUUUGAUAAUUUUCACAAUAAAGUUUCAAAAUUUUCAAAUUGGCUAAUAUGUGGCAUACAUGUUGGAAAUGACUAA