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BaseInfo

ncRNA ID novel_lus_miR42
Species Linum usitatissimum
Class miRNA
Genome position scaffold1249:231746-231911 [+]
Reference genome Lusitatissimum_200_BGIv1.0
Source SRR2996370
Length 24
Mature sequence(if miRNA) 143 - UUGACAUGGAUGUUGAAAAUGGCU - 166
Stem-loop(if miRNA) --      C    C G                 -    C    AAAUUC       A   C C   UA         G GUGU
  CUAUUU CAAC U CAUGUCAAAUAUUAGCC AAUU AAAA      AAUUUUU UGU A AAU  UCAAUUUUC U    U
  |||||| |||| | ||||||||||||||||| |||| ||||      ||||||| ||| | |||  ||||||||| |    A
  GGUAAA GUUG A GUACAGUUUAUAAUCGG UUAA UUUU      UUAAAAG ACA U UUA  AGUUAAAAG A    U
UC      A    U G                 C    C    AAAACU       A   A U   CC         G AUCA
Stem-loop sequence CUAUUUCCAACCUGCAUGUCAAAUAUUAGCCAAUUCAAAAAAAUUCAAUUUUUAUGUCACAAUUAUCAAUUUUCGUGUGUUAUACUAAGGAAAAUUGACCAUUUUAACAAGAAAAUUUCAAAAUUUUCAAUUCGGCUAAUAUUUGACAUGGAUGUUGAAAAUGGCU