ncRNA ID | novel_lus_miR42 |
Species | Linum usitatissimum |
Class | miRNA |
Genome position | scaffold1249:231746-231911 [+] |
Reference genome | Lusitatissimum_200_BGIv1.0 |
Source | SRR2996370 |
Length | 24 |
Mature sequence(if miRNA) | 143 - UUGACAUGGAUGUUGAAAAUGGCU - 166 |
Stem-loop(if miRNA) |
--      C    C G                 -    C    AAAUUC       A   C C   UA         G GUGU   CUAUUU CAAC U CAUGUCAAAUAUUAGCC AAUU AAAA      AAUUUUU UGU A AAU  UCAAUUUUC U    U   |||||| |||| | ||||||||||||||||| |||| ||||      ||||||| ||| | |||  ||||||||| |    A   GGUAAA GUUG A GUACAGUUUAUAAUCGG UUAA UUUU      UUAAAAG ACA U UUA  AGUUAAAAG A    U UC      A    U G                 C    C    AAAACU       A   A U   CC         G AUCA |
Stem-loop sequence | CUAUUUCCAACCUGCAUGUCAAAUAUUAGCCAAUUCAAAAAAAUUCAAUUUUUAUGUCACAAUUAUCAAUUUUCGUGUGUUAUACUAAGGAAAAUUGACCAUUUUAACAAGAAAAUUUCAAAAUUUUCAAUUCGGCUAAUAUUUGACAUGGAUGUUGAAAAUGGCU |