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BaseInfo

ncRNA ID	novel_jre_miR1057
Species	Juglans regia
Class	miRNA
Genome position	NW_017389308.1:195358-195524 [-]
Reference genome	wgs.5d
Source	SRR1168886
Length	24
Mature sequence(if miRNA)	144 - AAUGAUAUUUGCAGUCGUGAAUGU - 167
Stem-loop(if miRNA)	--    A   U          -         U   CG                  -    AAUAAAUAU A       -  G      AA   AAUG UAU UGCAGUCGUG AAUGUGUAA UGU  UGCAGUCGUUUUGAAAAA AGUG         G GAUCCAC AU AAAAGA  U   |||| ||| |||||||||| ||||||||| |||  |||||||||||||||||| ||||         | ||||||| || ||||||   UUAC AUG AUGUUAGCAC UUACGUAUU GCA  ACGUCAGCGAAACUUUUU UCAU         C CUAGGUG UA UUUUUU  U UA    A   U          C         U   AU                  C    --------- -       A  A      AA
Stem-loop sequence	AAUGAUAUUUGCAGUCGUGAAUGUGUAAUUGUCGUGCAGUCGUUUUGAAAAAAGUGAAUAAAUAUGAGAUCCACAUGAAAAGAAAUUAAUUUUUUAAUAGUGGAUCCUACUCUUUUUCAAAGCGACUGCAUAACGUUUAUGCAUUCCACGAUUGUAUGUAACAUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018984968.1	ncRNA:24   UGUAAGUGCUGACGUUUAUAGUAA   1   ||-|*|||||=||||||||||||| targets:140   AC-UCCACGAUUGCAAAUAUCAUU   162 Target Full Sequence	1.0	PREDICTED: Juglans regia ATP-dependent (S)-NAD(P)H-hydrate dehydratase (LOC109005882), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018952930.1	ncRNA:24   UGUAAGUGCUGACGUUUAUAGUAA   1   =|||||||||||||||*||||||| targets:3297   GCAUUCACGACUGCAACUAUCAUU   3320 Target Full Sequence	1.5	PREDICTED: Juglans regia pullulanase 1, chloroplastic (LOC108981688), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018952929.1	ncRNA:24   UGUAAGUGCUGACGUUUAUAGUAA   1   =|||||||||||||||*||||||| targets:3300   GCAUUCACGACUGCAACUAUCAUU   3323 Target Full Sequence	1.5	PREDICTED: Juglans regia pullulanase 1, chloroplastic (LOC108981688), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018986207.1	ncRNA:24   UGUAAGUGCUGACGUUUAUAGUAA   1   =||*|||||||||||=|||||||| targets:1748   GCACUCACGACUGCAGAUAUCAUU   1771 Target Full Sequence	1.5	PREDICTED: Juglans regia vacuolar amino acid transporter 1-like (LOC109006810), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018986206.1	ncRNA:24   UGUAAGUGCUGACGUUUAUAGUAA   1   =||*|||||||||||=|||||||| targets:1922   GCACUCACGACUGCAGAUAUCAUU   1945 Target Full Sequence	1.5	PREDICTED: Juglans regia vacuolar amino acid transporter 1-like (LOC109006810), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018986205.1	ncRNA:24   UGUAAGUGCUGACGUUUAUAGUAA   1   =||*|||||||||||=|||||||| targets:2003   GCACUCACGACUGCAGAUAUCAUU   2026 Target Full Sequence	1.5	PREDICTED: Juglans regia vacuolar amino acid transporter 1-like (LOC109006810), transcript variant X1, mRNA	NA	coding protein	psRNATarget