Search result

BaseInfo

ncRNA ID novel_jre_miR1048
Species Juglans regia
Class miRNA
Genome position NW_017389839.1:30670-30821 [-]
Reference genome wgs.5d
Source SRR1168886
Length 24
Mature sequence(if miRNA) 129 - AGAAUUUUGUGUCUCAUCUCACCC - 152
Stem-loop(if miRNA) --                     CC    A   U     CAUGUCU     CU       AU     GAA GG  AU
  AGAAUUUUGUGUCUCAUCUCA  CCCC AAC UGCCC       AUGGG  AAGGCUA  GUAAU   U  UG  G
  |||||||||||||||||||||  |||| ||| |||||       |||||  |||||||  |||||   |  ||
  UCUUAAAAUACAGAGUAGGGU  GGGG UUG ACGGG       UAUCU  UUUUGAU  UAUUG   G  GC  A
AC                     AC    A   U     AUUUUUC     -U       CU     -AG UU  GU
Stem-loop sequence AGAAUUUUGUGUCUCAUCUCACCCCCCAAACUUGCCCCAUGUCUAUGGGCUAAGGCUAAUGUAAUGAAUGGUGAUGAUGCGUUGGAGUUAUUCUAGUUUUUUCUAUCUUUUUAGGGCAUGUUAGGGGCAUGGGAUGAGACAUAAAAUUCUCA