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BaseInfo

ncRNA ID novel_jre_miR1045
Species Juglans regia
Class miRNA
Genome position NW_017389472.1:215302-215399 [+]
Reference genome wgs.5d
Source SRR1168884
Length 24
Mature sequence(if miRNA) 75 - AAAAUCCUCCCAACUCAUCAUUAC - 98
Stem-loop(if miRNA) --            A  U  GUUUG    -      UCAC      AAUC
  AAUGAUGAGUUG GA GA     UGAU CCAAAC    CCUUAA    C
  |||||||||||| || ||     |||| ||||||    ||||||
  UUACUACUCAAC CU CU     GCUA GGUUUG    GGAGUU    A
CA            C  C  -AAAA    A      CUUU      GAGC
Stem-loop sequence AAUGAUGAGUUGAGAUGAGUUUGUGAUCCAAACUCACCCUUAAAAUCCACGAGUUGAGGUUUCGUUUGGAAUCGAAAAUCCUCCCAACUCAUCAUUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018999005.1
ncRNA:24   CAUUACUACUCAACCCUCCUAAAA   1
  *|**|||||*|*||||||||||||
targets:880   AUCUUGAUGUGGUGGGAGGAUUUU   903

2.5 PREDICTED: Juglans regia DNA-directed RNA polymerase II subunit 1-like (LOC109016614), partial mRNA NA coding protein psRNATarget