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BaseInfo

ncRNA ID novel_jre_miR1041
Species Juglans regia
Class miRNA
Genome position NW_017443578.1:1554051-1554156 [+]
Reference genome wgs.5d
Source SRR1168884
Length 24
Mature sequence(if miRNA) 83 - UUUGGAGAAUUGUAGGGAAAUGCU - 106
Stem-loop(if miRNA) --U           -             -     -  -      UC UA    AU
   GUUUCCUUACA UUCUUCGGGUAUG UGGUC UG UAAGUU  U  GCCC  G
   ||||||||||| ||||||||||||| ||||| || ||||||  |  ||||  A
   UAAAGGGAUGU AAGAGGUUUAUAC AUCAG AC AUUCAG  A  UGGG  A
UCG           U             G     U  U      -U GC    AU
Stem-loop sequence UGUUUCCUUACAUUCUUCGGGUAUGUGGUCUGUAAGUUUCUUAGCCCAUGAAUAGGGUCGAUGACUUAUCAUGACUAGCAUAUUUGGAGAAUUGUAGGGAAAUGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018986651.1
ncRNA:24   UCGUAAAGGGAUGUUAAGAGGUUU   1
  *|==*||||||||*||||||||||
targets:203   UGUGAUUCCCUACCAUUCUCCAAA   226

1.5 PREDICTED: Juglans regia phosphatidylinositol 4-phosphate 5-kinase 1-like (LOC109007108), mRNA NA coding protein psRNATarget