ncRNA ID | novel_jre_miR1040 |
Species | Juglans regia |
Class | miRNA |
Genome position | NW_017443575.1:292042-292208 [+] |
Reference genome | wgs.5d |
Source | SRR1168884 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AAUGCUAUUUAUUAUCUCCACACU - 24 |
Stem-loop(if miRNA) |
--AAUGC           UC -   CU      C                A    U     C                 CUAUA        UAUUUAUUAUC  C ACA  GCAUAC AAUAUGUGAUUUGUUA UUUU UCAUU UAUUUAAAUACGCAUAU     C        |||||||||||  | |||  |||||| |||||||||||||||| |||| ||||| |||||||||||||||||        AUGAAUAGUAG  G UGU  UGUGUG UUGUAUACUAAAUAAU AAAA AGUAA AUAAAUUUGUGUGUAUA     A UUUUAAA           GA A   AG      A                A    C     A                 UAACU |
Stem-loop sequence | AAUGCUAUUUAUUAUCUCCACACUGCAUACCAAUAUGUGAUUUGUUAAUUUUUUCAUUCUAUUUAAAUACGCAUAUCUAUACAUCAAUAUAUGUGUGUUUAAAUAAAAUGACAAAAAUAAUAAAUCAUAUGUUAGUGUGUGAUGUAGAGGAUGAUAAGUAAAAUUUU |