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BaseInfo

ncRNA ID novel_jre_miR1040
Species Juglans regia
Class miRNA
Genome position NW_017443575.1:292042-292208 [+]
Reference genome wgs.5d
Source SRR1168884
Length 24
Mature sequence(if miRNA) 1 - AAUGCUAUUUAUUAUCUCCACACU - 24
Stem-loop(if miRNA) --AAUGC           UC -   CU      C                A    U     C                 CUAUA
       UAUUUAUUAUC  C ACA  GCAUAC AAUAUGUGAUUUGUUA UUUU UCAUU UAUUUAAAUACGCAUAU     C
       |||||||||||  | |||  |||||| |||||||||||||||| |||| ||||| |||||||||||||||||
       AUGAAUAGUAG  G UGU  UGUGUG UUGUAUACUAAAUAAU AAAA AGUAA AUAAAUUUGUGUGUAUA     A
UUUUAAA           GA A   AG      A                A    C     A                 UAACU
Stem-loop sequence AAUGCUAUUUAUUAUCUCCACACUGCAUACCAAUAUGUGAUUUGUUAAUUUUUUCAUUCUAUUUAAAUACGCAUAUCUAUACAUCAAUAUAUGUGUGUUUAAAUAAAAUGACAAAAAUAAUAAAUCAUAUGUUAGUGUGUGAUGUAGAGGAUGAUAAGUAAAAUUUU