Search result

BaseInfo

ncRNA ID	novel_jre_miR1035
Species	Juglans regia
Class	miRNA
Genome position	NW_017442945.1:188106-188270 [+]
Reference genome	wgs.5d
Source	SRR1168884
Length	24
Mature sequence(if miRNA)	1 - AAUGAUAUUUACAGUCGUGGAGUG - 24
Stem-loop(if miRNA)	--    A   U                    UCGCCA A  AUCCC       -U    AAAUAU    C    AUGG      AA   AAUG UAU UACAGUCGUGGAGUGUGCAA      C CA     UUUGAAA  GAGU      GGGA CCAC    AAAAAA  C   |||| ||| ||||||||||||||||||||      | ||     |||||||  ||||      |||| ||||    ||||||   UUAC AUG AUGUCAGUACUUUACGCGUU      G GU     AAACUUU  CUCA      CUCU GGUG    UUUUUU  U CA    G   C                    CACAAC C  CAACA       UU    ------    A    AUAA      AA
Stem-loop sequence	AAUGAUAUUUACAGUCGUGGAGUGUGCAAUCGCCACACAAUCCCUUUGAAAUGAGUAAAUAUGGGACCCACAUGGAAAAAAAACUAAUUUUUUAAUAGUGGAUCUCACUCUUUUUCAAAACAACUGCGCAACACUUGCGCAUUUCAUGACUGUACGUAGCAUUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018978823.1	ncRNA:24   GUGAGGUGCUGACAUUUAUAGUAA   1   *=***||*|||||||||||||||| targets:61   GGAGACAGGACUGUAAAUAUCAUU   84 Target Full Sequence	1.0	PREDICTED: Juglans regia beta-glucosidase 17-like (LOC109001505), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018978822.1	ncRNA:24   GUGAGGUGCUGACAUUUAUAGUAA   1   *=***||*|||||||||||||||| targets:58   GGAGACAGGACUGUAAAUAUCAUU   81 Target Full Sequence	1.0	PREDICTED: Juglans regia beta-glucosidase 17-like (LOC109001505), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018977864.1	ncRNA:24   GUGAGGUGCUGACAUUUAUAGUAA   1   =|=|==||||=||||||||||||| targets:1118   UAUUUUACGAUUGUAAAUAUCAUU   1141 Target Full Sequence	2.0	PREDICTED: Juglans regia uncharacterized LOC109000852 (LOC109000852), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018971108.1	ncRNA:24   GUGAGGUGCUGACAUUUAUAGUAA   1   |||||||**||||||||||||||| targets:1494   CACUCCAGAACUGUAAAUAUCAUU   1517 Target Full Sequence	2.0	PREDICTED: Juglans regia uncharacterized LOC108995531 (LOC108995531), mRNA	NA	coding protein	psRNATarget
XM_018984968.1	ncRNA:24   GUGAGGUGCUGACAUUUAUAGUAA   1   ||||||||||=||*|||||||||| targets:139   CACUCCACGAUUGCAAAUAUCAUU   162 Target Full Sequence	2.5	PREDICTED: Juglans regia ATP-dependent (S)-NAD(P)H-hydrate dehydratase (LOC109005882), transcript variant X2, mRNA	NA	coding protein	psRNATarget