ncRNA ID | novel_jre_miR1024 |
Species | Juglans regia |
Class | miRNA |
Genome position | NW_017389030.1:21479-21624 [+] |
Reference genome | wgs.5d |
Source | SRR1168883 |
Length | 24 |
Mature sequence(if miRNA) | 123 - ACGGUUACGCACUUCACGAUUGUA - 146 |
Stem-loop(if miRNA) |
--     A    U  UA     A  A      C C         ---A   AAUAAAACAUGAGACCCACAUAA   CAAUC UGAA UG  UAACC UC CGUAAU G UUUGAAAAA    AUG                       A   ||||| |||| ||  ||||| || |||||| | |||||||||    |||                       A   GUUAG ACUU AC  AUUGG AG GCAUUA C AAACUUUUU    CUU                       A AU     C    C  GC     C  C      U A         CUCA   CAGGUGAUAAUUUUUUAAUUAAA |
Stem-loop sequence | CAAUCAUGAAUUGUAUAACCAUCACGUAAUCGCUUUGAAAAAAAUGAAUAAAACAUGAGACCCACAUAAAAAAAAUUAAUUUUUUAAUAGUGGACUUCACUCUUUUUCAAAACUAUUACGCGACGGUUACGCACUUCACGAUUGUA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_018953401.1 |
|
2.0 | PREDICTED: Juglans regia receptor protein kinase CLAVATA1-like (LOC108982113), mRNA | NA | coding protein | psRNATarget |