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BaseInfo

ncRNA ID novel_jre_miR1024
Species Juglans regia
Class miRNA
Genome position NW_017389030.1:21479-21624 [+]
Reference genome wgs.5d
Source SRR1168883
Length 24
Mature sequence(if miRNA) 123 - ACGGUUACGCACUUCACGAUUGUA - 146
Stem-loop(if miRNA) --     A    U  UA     A  A      C C         ---A   AAUAAAACAUGAGACCCACAUAA
  CAAUC UGAA UG  UAACC UC CGUAAU G UUUGAAAAA    AUG                       A
  ||||| |||| ||  ||||| || |||||| | |||||||||    |||                       A
  GUUAG ACUU AC  AUUGG AG GCAUUA C AAACUUUUU    CUU                       A
AU     C    C  GC     C  C      U A         CUCA   CAGGUGAUAAUUUUUUAAUUAAA
Stem-loop sequence CAAUCAUGAAUUGUAUAACCAUCACGUAAUCGCUUUGAAAAAAAUGAAUAAAACAUGAGACCCACAUAAAAAAAAUUAAUUUUUUAAUAGUGGACUUCACUCUUUUUCAAAACUAUUACGCGACGGUUACGCACUUCACGAUUGUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018953401.1
ncRNA:24   AUGUUAGCACUUCACGCAUUGGCA   1
  |||||*|||||||||||||||||*
targets:2293   UACAACCGUGAAGUGCGUAACCGC   2316

2.0 PREDICTED: Juglans regia receptor protein kinase CLAVATA1-like (LOC108982113), mRNA NA coding protein psRNATarget