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BaseInfo

ncRNA ID	novel_jre_miR1004
Species	Juglans regia
Class	miRNA
Genome position	NW_017389495.1:136803-136953 [+]
Reference genome	wgs.5d
Source	SRR1168883
Length	23
Mature sequence(if miRNA)	129 - UUGCGCAUUCCACGACUGUACGU - 151
Stem-loop(if miRNA)	--U          -  C      U  C                    -     AUAAAUAA  GAC    -CUG      AA    UGCAGUCGUG AG GUGCAG CG CGUGCAGUCGCUUUGAAAAA AGUGA        GG   CCAC    AAAAGA  U    |||||||||| || |||||| || |||||||||||||||||||| |||||        ||   ||||    ||||||    AUGUCAGCAC UU CGCGUU GC GCACGUCAGCGAAACUUUUU UCACU        CC   GGUG    UUUUUU  U UGC          C  A      U  A                    C     --------  --A    AUAA      AA
Stem-loop sequence	UUGCAGUCGUGAGCGUGCAGUCGCCGUGCAGUCGCUUUGAAAAAAGUGAAUAAAUAAGGGACCCACCUGAAAAGAAAUUAAUUUUUUAAUAGUGGACCUCACUCUUUUUCAAAGCGACUGCACGACGUUUGCGCAUUCCACGACUGUACGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018983089.1	ncRNA:23   UGCAUGUCAGCACCUUACGCGUU   1   ||||||=|||||||||||||||| targets:281   ACGUACGGUCGUGGAAUGCGCAA   303 Target Full Sequence	1.0	PREDICTED: Juglans regia putative transporter arsB (LOC109004518), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018983090.1	ncRNA:23   UGCAUGUCAGCACCUUACGCGUU   1   ||||||=|||||||||||||||| targets:281   ACGUACGGUCGUGGAAUGCGCAA   303 Target Full Sequence	1.0	PREDICTED: Juglans regia putative transporter arsB (LOC109004518), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_018983086.1	ncRNA:23   UGCAUGUCAGCACCUUACGCGUU   1   ||||||=|||||||||||||||| targets:281   ACGUACGGUCGUGGAAUGCGCAA   303 Target Full Sequence	1.0	PREDICTED: Juglans regia putative transporter arsB (LOC109004518), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018994468.1	ncRNA:23   UGCAUGUCAGCACCUUACGCGUU   1   ||*||||||||||||=||||||| targets:1431   ACAUACAGUCGUGGAGUGCGCAA   1453 Target Full Sequence	1.5	PREDICTED: Juglans regia serine/threonine-protein phosphatase PP1-like (LOC109012694), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_018974968.1	ncRNA:23   UGCAUGUCAGCACCUUACGCGUU   1   ||*||||||||||*||||||||| targets:1096   ACAUACAGUCGUGAAAUGCGCAA   1118 Target Full Sequence	1.5	PREDICTED: Juglans regia uncharacterized LOC108998416 (LOC108998416), mRNA	NA	coding protein	psRNATarget
XM_018964869.1	ncRNA:23   UGCAUGUCAGCACCUUACGCGUU   1   ||*||||||=*|||||||||||| targets:1058   ACAUACAGUUAUGGAAUGCGCAA   1080 Target Full Sequence	2.5	PREDICTED: Juglans regia histone-lysine N-methyltransferase ATXR2-like (LOC108990784), mRNA	NA	coding protein	psRNATarget
XM_018980788.1	ncRNA:23   UGCAUGUCAGCACCUUACGCGUU   1   ||*||||||=*|||||||||||| targets:1587   ACAUACAGUUAUGGAAUGCGCAA   1609 Target Full Sequence	2.5	PREDICTED: Juglans regia histone-lysine N-methyltransferase ATXR2-like (LOC109002870), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018980787.1	ncRNA:23   UGCAUGUCAGCACCUUACGCGUU   1   ||*||||||=*|||||||||||| targets:1660   ACAUACAGUUAUGGAAUGCGCAA   1682 Target Full Sequence	2.5	PREDICTED: Juglans regia histone-lysine N-methyltransferase ATXR2-like (LOC109002870), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018980786.1	ncRNA:23   UGCAUGUCAGCACCUUACGCGUU   1   ||*||||||=*|||||||||||| targets:1884   ACAUACAGUUAUGGAAUGCGCAA   1906 Target Full Sequence	2.5	PREDICTED: Juglans regia histone-lysine N-methyltransferase ATXR2-like (LOC109002870), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018967640.1	ncRNA:23   UGCAUGUCAGCACCUUACGCGUU   1   ||*||=|||||||||||||*||| targets:2076   ACAUAUAGUCGUGGAAUGCUCAA   2098 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC108992921 (LOC108992921), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018967641.1	ncRNA:23   UGCAUGUCAGCACCUUACGCGUU   1   ||*||=|||||||||||||*||| targets:2126   ACAUAUAGUCGUGGAAUGCUCAA   2148 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC108992921 (LOC108992921), transcript variant X2, mRNA	NA	coding protein	psRNATarget