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BaseInfo

ncRNA ID	novel_jre_miR1000
Species	Juglans regia
Class	miRNA
Genome position	NW_017388853.1:536884-537027 [+]
Reference genome	wgs.5d
Source	SRR1168883
Length	21
Mature sequence(if miRNA)	124 - UUGUCUCUUGUUGUUAUGAUG - 144
Stem-loop(if miRNA)	--G      --     U  U     CUAUCU   UUGA    AU       AAAG   UGAA   -  UC     CAU    CAUAAU  CAGGA GA CAGGU      CUG    AAGC  GCCAAGU    AGC    GAG CU  AGGGU   C    ||||||  ||||| || |||||      |||    ||||  |||||||    |||    ||| ||  |||||    GUAUUG  GUUCU CU GUUCG      GAU    UUCG  UGGUUCA    UUG    CUC GA  UUCCG   C GUA      UU     -  -     -UAAAU   -UGA    --       -ACA   CAUG   C  --     UAA
Stem-loop sequence	GCAUAAUCAGGAUGAUCAGGUCUAUCUCUGUUGAAAGCAUGCCAAGUAAAGAGCUGAAGAGCUUCAGGGUCAUCCAAUGCCUUAGCCUCGUACGUUACAACUUGGUGCUUAGUUAGUAAAUGCUUGUCUCUUGUUGUUAUGAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_019002156.1	ncRNA:21   GUAGUAUUGUUGUUCUCUGUU   1   ||||||||||||||||||=|| targets:1018   CAUCAUAACAACAAGAGAUAA   1038 Target Full Sequence	1.5	PREDICTED: Juglans regia TMV resistance protein N-like (LOC109019787), partial mRNA	NA	coding protein	psRNATarget
XM_018950543.1	ncRNA:21   GUAGUAUUGUUGUUCUCUGUU   1   ||||||||||||||||||=|| targets:127   CAUCAUAACAACAAGAGAUAA   147 Target Full Sequence	1.5	PREDICTED: Juglans regia TMV resistance protein N-like (LOC108979782), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018950544.1	ncRNA:21   GUAGUAUUGUUGUUCUCUGUU   1   ||||||||||||||||||=|| targets:127   CAUCAUAACAACAAGAGAUAA   147 Target Full Sequence	1.5	PREDICTED: Juglans regia TMV resistance protein N-like (LOC108979782), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018950542.1	ncRNA:21   GUAGUAUUGUUGUUCUCUGUU   1   ||||||||||||||||||=|| targets:127   CAUCAUAACAACAAGAGAUAA   147 Target Full Sequence	1.5	PREDICTED: Juglans regia TMV resistance protein N-like (LOC108979782), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_019002749.1	ncRNA:21   GUAGUAUUGUUGUUCUCUGUU   1   ||||||||||||||||||=|| targets:1017   CAUCAUAACAACAAGAGAUAA   1037 Target Full Sequence	1.5	PREDICTED: Juglans regia TMV resistance protein N-like (LOC109020309), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018997203.1	ncRNA:21   GUAGUAUUGUUGUUCUCUGUU   1   ||||||||||||||||||=|| targets:1054   CAUCAUAACAACAAGAGAUAA   1074 Target Full Sequence	1.5	PREDICTED: Juglans regia disease resistance protein RRS1-like (LOC109014710), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_019002748.1	ncRNA:21   GUAGUAUUGUUGUUCUCUGUU   1   ||||||||||||||||||=|| targets:1017   CAUCAUAACAACAAGAGAUAA   1037 Target Full Sequence	1.5	PREDICTED: Juglans regia TMV resistance protein N-like (LOC109020309), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_019002747.1	ncRNA:21   GUAGUAUUGUUGUUCUCUGUU   1   ||||||||||||||||||=|| targets:1017   CAUCAUAACAACAAGAGAUAA   1037 Target Full Sequence	1.5	PREDICTED: Juglans regia TMV resistance protein N-like (LOC109020309), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018950007.1	ncRNA:21   GUAGUAUUGUUGUUCUCUGUU   1   |||||||||||||||=||||| targets:993   CAUCAUAACAACAAGGGACAA   1013 Target Full Sequence	1.5	PREDICTED: Juglans regia TMV resistance protein N-like (LOC108979347), mRNA	NA	coding protein	psRNATarget
XM_019002746.1	ncRNA:21   GUAGUAUUGUUGUUCUCUGUU   1   ||||||||||||||||||=|| targets:1017   CAUCAUAACAACAAGAGAUAA   1037 Target Full Sequence	1.5	PREDICTED: Juglans regia TMV resistance protein N-like (LOC109020309), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018971115.1	ncRNA:21   GUAGUAUUGUUGUUCUCUGUU   1   |||=||||||||||||||=|| targets:327   CAUUAUAACAACAAGAGAUAA   347 Target Full Sequence	2.5	PREDICTED: Juglans regia TMV resistance protein N-like (LOC108995537), mRNA	NA	coding protein	psRNATarget
XM_018965167.1	ncRNA:21   GUAGUAUUGUUGUUCUCUGUU   1   |||=||||||||||||||=|| targets:324   CAUUAUAACAACAAGAGAUAA   344 Target Full Sequence	2.5	PREDICTED: Juglans regia TMV resistance protein N-like (LOC108991024), mRNA	NA	coding protein	psRNATarget
XM_018950298.1	ncRNA:21   GUAGUAUUGUUGUUCUCUGUU   1   |||=||||||||||||||=|| targets:491   CAUUAUAACAACAAGAGAUAA   511 Target Full Sequence	2.5	PREDICTED: Juglans regia TMV resistance protein N-like (LOC108979594), mRNA	NA	coding protein	psRNATarget
XM_018955416.1	ncRNA:21   GUAGUAUUGUUGUUCUCUGUU   1   |||=||||||||||||||=|| targets:981   CAUUAUAACAACAAGAGAUAA   1001 Target Full Sequence	2.5	PREDICTED: Juglans regia TMV resistance protein N-like (LOC108983689), mRNA	NA	coding protein	psRNATarget
XM_018998022.1	ncRNA:21   GUAGUAUUGUUGUUCUCUGUU   1   |||=||||||||||||||=|| targets:1087   CAUUAUAACAACAAGAGAUAA   1107 Target Full Sequence	2.5	PREDICTED: Juglans regia TMV resistance protein N-like (LOC109015552), mRNA	NA	coding protein	psRNATarget
XM_019002887.1	ncRNA:21   GUAGUAUUGUUGUUCUCUGUU   1   |||=||||||||||||||=|| targets:1071   CAUUAUAACAACAAGAGAUAA   1091 Target Full Sequence	2.5	PREDICTED: Juglans regia TMV resistance protein N-like (LOC109020430), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_019002886.1	ncRNA:21   GUAGUAUUGUUGUUCUCUGUU   1   |||=||||||||||||||=|| targets:1071   CAUUAUAACAACAAGAGAUAA   1091 Target Full Sequence	2.5	PREDICTED: Juglans regia TMV resistance protein N-like (LOC109020430), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_019003674.1	ncRNA:21   GUAGUAUUGUUGUUCUCUGUU   1   |||=||||||||||||||=|| targets:1025   CAUUAUAACAACAAGAGAUAA   1045 Target Full Sequence	2.5	PREDICTED: Juglans regia TMV resistance protein N-like (LOC109021114), mRNA	NA	coding protein	psRNATarget
XM_019002885.1	ncRNA:21   GUAGUAUUGUUGUUCUCUGUU   1   |||=||||||||||||||=|| targets:1071   CAUUAUAACAACAAGAGAUAA   1091 Target Full Sequence	2.5	PREDICTED: Juglans regia TMV resistance protein N-like (LOC109020430), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018955853.1	ncRNA:21   GUAGUAUUGUUGUUCUCUGUU   1   |||=||||||||||||||=|| targets:1037   CAUUAUAACAACAAGAGAUAA   1057 Target Full Sequence	2.5	PREDICTED: Juglans regia TMV resistance protein N-like (LOC108984026), mRNA	NA	coding protein	psRNATarget
XM_018952784.1	ncRNA:21   GUAGUAUUGUUGUUCUCUGUU   1   |||=||||||||||||||=|| targets:930   CAUUAUAACAACAAGAGAUAA   950 Target Full Sequence	2.5	PREDICTED: Juglans regia TMV resistance protein N-like (LOC108981563), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018989401.1	ncRNA:21   GUAGUAUUGUUGUUCUCUGUU   1   |||=||||||||||||||=|| targets:1062   CAUUAUAACAACAAGAGAUAA   1082 Target Full Sequence	2.5	PREDICTED: Juglans regia TMV resistance protein N-like (LOC109009059), mRNA	NA	coding protein	psRNATarget
XM_018952783.1	ncRNA:21   GUAGUAUUGUUGUUCUCUGUU   1   |||=||||||||||||||=|| targets:1068   CAUUAUAACAACAAGAGAUAA   1088 Target Full Sequence	2.5	PREDICTED: Juglans regia TMV resistance protein N-like (LOC108981563), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018952782.1	ncRNA:21   GUAGUAUUGUUGUUCUCUGUU   1   |||=||||||||||||||=|| targets:1071   CAUUAUAACAACAAGAGAUAA   1091 Target Full Sequence	2.5	PREDICTED: Juglans regia TMV resistance protein N-like (LOC108981563), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_019002883.1	ncRNA:21   GUAGUAUUGUUGUUCUCUGUU   1   |||=||||||||||||||=|| targets:1071   CAUUAUAACAACAAGAGAUAA   1091 Target Full Sequence	2.5	PREDICTED: Juglans regia TMV resistance protein N-like (LOC109020430), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018984563.1	ncRNA:21   GUAGUAUUGUUGUUCUCUGUU   1   ||||||*|||||||||||=|| targets:450   CAUCAUCACAACAAGAGAUAA   470 Target Full Sequence	2.5	PREDICTED: Juglans regia TMV resistance protein N-like (LOC109005565), mRNA	NA	coding protein	psRNATarget
XM_018980280.1	ncRNA:21   GUAGUAUUGUUGUUCUCUGUU   1   ||||||*|||||||||||=|| targets:1264   CAUCAUCACAACAAGAGAUAA   1284 Target Full Sequence	2.5	PREDICTED: Juglans regia TMV resistance protein N-like (LOC109002496), partial mRNA	NA	coding protein	psRNATarget
XM_018982157.1	ncRNA:21   GUAGUAUUGUUGUUCUCUGUU   1   =|||||*|||||||||||=|| targets:1180   UAUCAUUACAACAAGAGAUAA   1200 Target Full Sequence	2.5	PREDICTED: Juglans regia TMV resistance protein N-like (LOC109003844), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_019000723.1	ncRNA:21   GUAGUAUUGUUGUUCUCUGUU   1   =*|=||||||||||||||=|| targets:993   UCUUAUAACAACAAGAGAUAA   1013 Target Full Sequence	2.5	PREDICTED: Juglans regia TMV resistance protein N-like (LOC109018560), mRNA	NA	coding protein	psRNATarget
XM_019000018.1	ncRNA:21   GUAGUAUUGUUGUUCUCUGUU   1   =*|=||||||||||||||=|| targets:993   UCUUAUAACAACAAGAGAUAA   1013 Target Full Sequence	2.5	PREDICTED: Juglans regia TMV resistance protein N-like (LOC109017837), mRNA	NA	coding protein	psRNATarget
XM_019003673.1	ncRNA:21   GUAGUAUUGUUGUUCUCUGUU   1   =*|=||||||||||||||=|| targets:993   UCUUAUAACAACAAGAGAUAA   1013 Target Full Sequence	2.5	PREDICTED: Juglans regia TMV resistance protein N-like (LOC109021112), mRNA	NA	coding protein	psRNATarget
XM_018965170.1	ncRNA:21   GUAGUAUUGUUGUUCUCUGUU   1   =*|=||||||||||||||=|| targets:993   UCUUAUAACAACAAGAGAUAA   1013 Target Full Sequence	2.5	PREDICTED: Juglans regia TMV resistance protein N-like (LOC108991026), partial mRNA	NA	coding protein	psRNATarget
XM_019002888.1	ncRNA:21   GUAGUAUUGUUGUUCUCUGUU   1   =*|=||||||||||||||=|| targets:897   UCUUAUAACAACAAGAGAUAA   917 Target Full Sequence	2.5	PREDICTED: Juglans regia TMV resistance protein N-like (LOC109020431), mRNA	NA	coding protein	psRNATarget
XM_018950726.1	ncRNA:21   GUAGUAUUGUUGUUCUCU-GUU   1   ||||||||||||||||||-||| targets:1021   CAUCAUAACAACAAGAGAUCAA   1042 Target Full Sequence	3.0	PREDICTED: Juglans regia TMV resistance protein N-like (LOC108979928), mRNA	NA	coding protein	psRNATarget
XM_018995360.1	ncRNA:21   GUAGUAUUGUUGUUCUCU-GUU   1   ||||||||||||||||||-||| targets:1371   CAUCAUAACAACAAGAGAUCAA   1392 Target Full Sequence	3.0	PREDICTED: Juglans regia TMV resistance protein N-like (LOC109013125), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_018995259.1	ncRNA:21   GUAGUAUUGUUGUUCUCU-GUU   1   ||||||||||||||||||-||| targets:1371   CAUCAUAACAACAAGAGAUCAA   1392 Target Full Sequence	3.0	PREDICTED: Juglans regia TMV resistance protein N-like (LOC109013125), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018951719.1	ncRNA:21   GUAGUAUUGUUGUUCUCU-GUU   1   ||||||||||||||||||-||| targets:1023   CAUCAUAACAACAAGAGAUCAA   1044 Target Full Sequence	3.0	PREDICTED: Juglans regia TMV resistance protein N-like (LOC108980720), mRNA	NA	coding protein	psRNATarget
XM_018972746.1	ncRNA:21   GUAGUAUUGUUGUUCUCU-GUU   1   ||||||||||||||||||-||| targets:1097   CAUCAUAACAACAAGAGAUCAA   1118 Target Full Sequence	3.0	PREDICTED: Juglans regia TMV resistance protein N-like (LOC108996729), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_019000381.1	ncRNA:21   GUAGUAUUGUUGUUCUCU-GUU   1   ||||||||||||||||||-||| targets:1094   CAUCAUAACAACAAGAGAUCAA   1115 Target Full Sequence	3.0	PREDICTED: Juglans regia TMV resistance protein N-like (LOC109018212), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018995176.1	ncRNA:21   GUAGUAUUGUUGUUCUCU-GUU   1   ||||||||||||||||||-||| targets:1369   CAUCAUAACAACAAGAGAUCAA   1390 Target Full Sequence	3.0	PREDICTED: Juglans regia TMV resistance protein N-like (LOC109013125), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018986680.1	ncRNA:21   GUAGUAUUGUUGUUCUCU-GUU   1   ||||||||||||||||||-||| targets:1228   CAUCAUAACAACAAGAGAUCAA   1249 Target Full Sequence	3.0	PREDICTED: Juglans regia TMV resistance protein N-like (LOC109007136), mRNA	NA	coding protein	psRNATarget
XM_018964938.1	ncRNA:21   GUAGUAUUGUUGUUCUCU-GUU   1   ||||||||||||||||||-||| targets:1068   CAUCAUAACAACAAGAGAUCAA   1089 Target Full Sequence	3.0	PREDICTED: Juglans regia TMV resistance protein N-like (LOC108990840), mRNA	NA	coding protein	psRNATarget
XM_018972744.1	ncRNA:21   GUAGUAUUGUUGUUCUCU-GUU   1   ||||||||||||||||||-||| targets:1097   CAUCAUAACAACAAGAGAUCAA   1118 Target Full Sequence	3.0	PREDICTED: Juglans regia TMV resistance protein N-like (LOC108996729), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018992659.1	ncRNA:21   GUAGUAUUGUUGUUCUCU-GUU   1   ||||||||||||||||||-||| targets:441   CAUCAUAACAACAAGAGAUCAA   462 Target Full Sequence	3.0	PREDICTED: Juglans regia TMV resistance protein N-like (LOC109011448), mRNA	NA	coding protein	psRNATarget
XM_019000380.1	ncRNA:21   GUAGUAUUGUUGUUCUCU-GUU   1   ||||||||||||||||||-||| targets:1094   CAUCAUAACAACAAGAGAUCAA   1115 Target Full Sequence	3.0	PREDICTED: Juglans regia TMV resistance protein N-like (LOC109018212), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018972743.1	ncRNA:21   GUAGUAUUGUUGUUCUCU-GUU   1   ||||||||||||||||||-||| targets:1098   CAUCAUAACAACAAGAGAUCAA   1119 Target Full Sequence	3.0	PREDICTED: Juglans regia TMV resistance protein N-like (LOC108996729), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018991421.1	ncRNA:21   GUAGUAUUGUUGUUCUCU-GUU   1   ||||||||||||||||||-||| targets:2269   CAUCAUAACAACAAGAGAUCAA   2290 Target Full Sequence	3.0	PREDICTED: Juglans regia TMV resistance protein N-like (LOC109010557), mRNA	NA	coding protein	psRNATarget