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BaseInfo

ncRNA ID novel_jre_miR998
Species Juglans regia
Class miRNA
Genome position NW_017389069.1:311568-311789 [+]
Reference genome wgs.5d
Source SRR1168881
Length 24
Mature sequence(if miRNA) 1 - AUUUUCGUGAGACAGAAGACCUUC - 24
Stem-loop(if miRNA) --                AG               A    -AAAA             -C                UC    CACC        UC               A
  AUUUUCGUGAGACAGA  ACCUUCUUGUUCUUU AAAA     AAUCUUUUAUUUU  UUUUCAAUAAAAAAAA  AUGU    GUCGGUAU  GGUUUGGUGUGUCAA C
  ||||||||||||||||  ||||||||||||||| ||||     |||||||||||||  ||||||||||||||||  ||||    ||||||||  ||||||||||||||| G
  UAAAAGUAUUCUGUCU  UGGAAGAAUAAGAGA UUUU     UUAGAAAAUAAAA  AAAAGUUAUUUUUUUU  UACA    CAGCUAUG  CUAAACCACGCAGUU G
AU                AA               G    AAAAG             AU                -U    AUCA        CA               C
Stem-loop sequence AUUUUCGUGAGACAGAAGACCUUCUUGUUCUUUAAAAAAAAAAAUCUUUUAUUUUCUUUUCAAUAAAAAAAAUCAUGUCACCGUCGGUAUUCGGUUUGGUGUGUCAAACGGCUUGACGCACCAAAUCACGUAUCGACACUAACAUUUUUUUUUUAUUGAAAAUAAAAAUAAAAGAUUGAAAAUUUUGAGAGAAUAAGAAGGUAAUCUGUCUUAUGAAAAUUA