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BaseInfo

ncRNA ID	novel_jre_miR989
Species	Juglans regia
Class	miRNA
Genome position	NW_017443532.1:2324253-2324372 [-]
Reference genome	wgs.5d
Source	SRR1168881
Length	21
Mature sequence(if miRNA)	100 - UUCAUCAUCCUCUCAUCAUCU - 120
Stem-loop(if miRNA)	--                   CU      G  GC    A     A  UUU  AAGUGAAA   UUCAUCAUCCUCUCAUCAU  CAUGAU UG  AUUA AUGAU GA   AC        U   |||||||||||||||||||  |||||| ||  |||| ||||| ||   ||        A   AAGUAGUAGGAGAGUAGUA  GUAUUA AC  UAAU UACUA CU   UG        U AA                   AG      A  UA    C     A  -UU  AUAAAUAA
Stem-loop sequence	UUCAUCAUCCUCUCAUCAUCUCAUGAUGUGGCAUUAAAUGAUAGAUUUACAAGUGAAAUAUAAUAAAUAGUUUUCAAUCAUCUAAUAUCAAAUUAUGGAAUGAUGAGAGGAUGAUGAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018963746.1	ncRNA:21   UCUACUACUCUCCUACUACUU   1   ||**||||||||||||||||| targets:1035   AGUGGAUGAGAGGAUGAUGAA   1055 Target Full Sequence	2.0	PREDICTED: Juglans regia pentatricopeptide repeat-containing protein At1g09900-like (LOC108989956), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018963745.1	ncRNA:21   UCUACUACUCUCCUACUACUU   1   ||**||||||||||||||||| targets:1152   AGUGGAUGAGAGGAUGAUGAA   1172 Target Full Sequence	2.0	PREDICTED: Juglans regia pentatricopeptide repeat-containing protein At1g09900-like (LOC108989956), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018967617.1	ncRNA:21   UCUACUACUCUCCUACUACUU   1   ||||*||||||||*||||||| targets:950   AGAUUAUGAGAGGUUGAUGAA   970 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC108992899 (LOC108992899), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018953953.1	ncRNA:21   UCUACUACUCUC-CUACUACUU   1   =|||||||||||-||||||||| targets:1718   GGAUGAUGAGAGUGAUGAUGAA   1739 Target Full Sequence	3.0	PREDICTED: Juglans regia transcription termination factor MTERF4, chloroplastic (LOC108982543), mRNA	NA	coding protein	psRNATarget
XM_018956028.1	ncRNA:21   UCUACUACU-CUCCUACUACUU   1   *||||||||-|||||||||||| targets:1672   UGAUGAUGACGAGGAUGAUGAA   1693 Target Full Sequence	3.0	PREDICTED: Juglans regia serine/threonine-protein phosphatase 4 regulatory subunit 3-like (LOC108984164), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_018956027.1	ncRNA:21   UCUACUACU-CUCCUACUACUU   1   *||||||||-|||||||||||| targets:1828   UGAUGAUGACGAGGAUGAUGAA   1849 Target Full Sequence	3.0	PREDICTED: Juglans regia serine/threonine-protein phosphatase 4 regulatory subunit 3-like (LOC108984164), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018956026.1	ncRNA:21   UCUACUACU-CUCCUACUACUU   1   *||||||||-|||||||||||| targets:1837   UGAUGAUGACGAGGAUGAUGAA   1858 Target Full Sequence	3.0	PREDICTED: Juglans regia serine/threonine-protein phosphatase 4 regulatory subunit 3-like (LOC108984164), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018956025.1	ncRNA:21   UCUACUACU-CUCCUACUACUU   1   *||||||||-|||||||||||| targets:2208   UGAUGAUGACGAGGAUGAUGAA   2229 Target Full Sequence	3.0	PREDICTED: Juglans regia serine/threonine-protein phosphatase 4 regulatory subunit 3-like (LOC108984164), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018956024.1	ncRNA:21   UCUACUACU-CUCCUACUACUU   1   *||||||||-|||||||||||| targets:2217   UGAUGAUGACGAGGAUGAUGAA   2238 Target Full Sequence	3.0	PREDICTED: Juglans regia serine/threonine-protein phosphatase 4 regulatory subunit 3-like (LOC108984164), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018970099.1	ncRNA:21   UCUACUACU-CUCCUACUACUU   1   *||||||||-|||||||||||| targets:2419   UGAUGAUGAUGAGGAUGAUGAA   2440 Target Full Sequence	3.0	PREDICTED: Juglans regia serine/threonine-protein phosphatase 4 regulatory subunit 3-like (LOC108994769), mRNA	NA	coding protein	psRNATarget