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BaseInfo

ncRNA ID novel_jre_miR985
Species Juglans regia
Class miRNA
Genome position NW_017443516.1:756108-756215 [-]
Reference genome wgs.5d
Source SRR1168881;SRR1168884
Length 24
Mature sequence(if miRNA) 1 - UUUCAAAGUGAUUGCGCGGCACUU - 24
Stem-loop(if miRNA) --    UA A               A     ---------   -     U  U      U
  GUGC  U CAGUCAUUUUGAAAA GAGUG         GAG UCUAC AU AAAAAA U
  ||||  | ||||||||||||||| |||||         ||| ||||| || ||||||
  CACG  G GUUAGUGAAACUUUU UUCAC         CUC GGGUG UA UUUUUU A
UU    GC C               -     UUAUUUAUG   U     -  C      A
Stem-loop sequence GUGCUAUACAGUCAUUUUGAAAAAGAGUGGAGUCUACUAUUAAAAAAUUAAUUUUUUCAUGUGGGUCUCGUAUUUAUUCACUUUUUUCAAAGUGAUUGCGCGGCACUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018994468.1
ncRNA:24   UUCACGGCGCGUUAGUGAAACUUU   1
  ||||*|||=|||=|||||||||||
targets:1452   AAGUACCGUGCAGUCACUUUGAAA   1475

2.5 PREDICTED: Juglans regia serine/threonine-protein phosphatase PP1-like (LOC109012694), transcript variant X6, mRNA NA coding protein psRNATarget
XM_018987355.1
ncRNA:24   UUCACGGCGCGUUAGUGAAACUUU   1
  ||**||||||=||||=||||||||
targets:1848   AACCGCCGCGUAAUCGCUUUGAAA   1871

2.5 PREDICTED: Juglans regia 7-deoxyloganetin glucosyltransferase-like (LOC109007610), mRNA NA coding protein psRNATarget