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BaseInfo

ncRNA ID	novel_jre_miR978
Species	Juglans regia
Class	miRNA
Genome position	NW_017442077.1:7218-7386 [+]
Reference genome	wgs.5d
Source	SRR1168881
Length	24
Mature sequence(if miRNA)	1 - AAAUGAUAUUUGCAGUCGUGAGCG - 24
Stem-loop(if miRNA)	--A    A   U            -C      U  C         A          ---A  GAAUAAAUAAGGGAUCCACCUGAA    AAUG UAU UGCAGUCGUGAG  GUGCAG CG CGUGCAGUC UUUUGAAAAA    AU                        A    |||| ||| ||||||||||||  |||||| || ||||||||| ||||||||||    ||                        A    UUAC AUG AUGUCAGCAUUU  CACGUU GU GCACGUCAG GAAAUUUUUU    CC                        G UCA    G   U            UA      U  A         A          CUCA  UCAGGUGAUAAUUUUUUAAUUAAA
Stem-loop sequence	AAAUGAUAUUUGCAGUCGUGAGCGUGCAGUCGCCGUGCAGUCAUUUUGAAAAAAAUGAAUAAAUAAGGGAUCCACCUGAAAAGAAAUUAAUUUUUUAAUAGUGGACUCCACUCUUUUUUAAAGAGACUGCACGAUGUUUGCACAUUUUACGACUGUAUGUAGCAUUACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018986207.1	ncRNA:24   GCGAGUGCUGACGUUUAUAGUAAA   1   |*||||||||||||=||||||||| targets:1749   CACUCACGACUGCAGAUAUCAUUU   1772 Target Full Sequence	1.5	PREDICTED: Juglans regia vacuolar amino acid transporter 1-like (LOC109006810), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018986206.1	ncRNA:24   GCGAGUGCUGACGUUUAUAGUAAA   1   |*||||||||||||=||||||||| targets:1923   CACUCACGACUGCAGAUAUCAUUU   1946 Target Full Sequence	1.5	PREDICTED: Juglans regia vacuolar amino acid transporter 1-like (LOC109006810), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018986205.1	ncRNA:24   GCGAGUGCUGACGUUUAUAGUAAA   1   |*||||||||||||=||||||||| targets:2004   CACUCACGACUGCAGAUAUCAUUU   2027 Target Full Sequence	1.5	PREDICTED: Juglans regia vacuolar amino acid transporter 1-like (LOC109006810), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018952930.1	ncRNA:24   GCG--AGUGCUGACGUUUAUAGUAAA   1   =||--||||||||||||*|||||||| targets:3296   UGCAUUCACGACUGCAACUAUCAUUU   3321 Target Full Sequence	1.5	PREDICTED: Juglans regia pullulanase 1, chloroplastic (LOC108981688), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018952929.1	ncRNA:24   GCG--AGUGCUGACGUUUAUAGUAAA   1   =||--||||||||||||*|||||||| targets:3299   UGCAUUCACGACUGCAACUAUCAUUU   3324 Target Full Sequence	1.5	PREDICTED: Juglans regia pullulanase 1, chloroplastic (LOC108981688), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018977864.1	ncRNA:24   GCG---AGUGCUGACGUUUAUAGUAAA   1   ||=---|=||||=||=||||||||||| targets:1116   CGUAUUUUACGAUUGUAAAUAUCAUUU   1142 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC109000852 (LOC109000852), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018970092.1	ncRNA:24   GCGAGUGCUGACGUUUAUAGUAAA   1   |||*|||*|||||||*|||||||| targets:3861   CGCACACAACUGCAACUAUCAUUU   3884 Target Full Sequence	2.5	PREDICTED: Juglans regia translation initiation factor eIF-2B subunit epsilon (LOC108994766), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_018998442.1	ncRNA:24   GCGAGUGCUGACGUUUAUAGUAAA   1   *||-|||*|||||||||||=|||| targets:5   AGC-CACCACUGCAAAUAUUAUUU   27 Target Full Sequence	2.5	PREDICTED: Juglans regia protein NRT1/ PTR FAMILY 6.1-like (LOC109015982), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018973713.1	ncRNA:23   CGAGUGCUGACGUUUAUAGUAAA   1   ||-|||*|||||||||||=|||| targets:1   GC-CACCACUGCAAAUAUUAUUU   22 Target Full Sequence	2.5	PREDICTED: Juglans regia protein NRT1/ PTR FAMILY 6.1 (LOC108997433), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018978823.1	ncRNA:24   GCGAGUGCUGACGUUUAUAGUAAA   1   ****||*|||||=||||||||||| targets:62   GAGACAGGACUGUAAAUAUCAUUU   85 Target Full Sequence	2.5	PREDICTED: Juglans regia beta-glucosidase 17-like (LOC109001505), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018978822.1	ncRNA:24   GCGAGUGCUGACGUUUAUAGUAAA   1   ****||*|||||=||||||||||| targets:59   GAGACAGGACUGUAAAUAUCAUUU   82 Target Full Sequence	2.5	PREDICTED: Juglans regia beta-glucosidase 17-like (LOC109001505), transcript variant X1, mRNA	NA	coding protein	psRNATarget