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BaseInfo

ncRNA ID novel_jre_miR975
Species Juglans regia
Class miRNA
Genome position NW_017441211.1:30211-30324 [+]
Reference genome wgs.5d
Source SRR1168881
Length 24
Mature sequence(if miRNA) 91 - AAUAAUCCGUCAUAAAUACUCGUU - 114
Stem-loop(if miRNA) --U UU          UA       C U  AAA           CCUAUU     GA
   G  UAUUUGUGAC  AUUAUUU U GC   AAUGAUUAUUU      AAAAU  G
   |  ||||||||||  ||||||| | ||   |||||||||||      |||||
   C  AUAAAUACUG  UAAUAAA A UG   UUACUGAUAAA      UUUUG  U
UUG UC          CC       C C  CUG           CACUGU     UC
Stem-loop sequence UGUUUAUUUGUGACUAAUUAUUUCUUGCAAAAAUGAUUAUUUCCUAUUAAAAUGAGUCUGUUUUUGUCACAAAUAGUCAUUGUCGUCACAAAUAAUCCGUCAUAAAUACUCGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018969796.1
ncRNA:24   UUGCUCAUAAAUACUGCCUAAUAA   1
  |||||||||||=||||||||||||
targets:1625   AACGAGUAUUUGUGACGGAUUAUU   1648

1.5 PREDICTED: Juglans regia zinc finger protein CONSTANS-LIKE 16-like (LOC108994549), mRNA NA coding protein psRNATarget