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BaseInfo

ncRNA ID novel_jre_miR968
Species Juglans regia
Class miRNA
Genome position NW_017437766.1:17824-17930 [+]
Reference genome wgs.5d
Source SRR1168881
Length 24
Mature sequence(if miRNA) 84 - UUUUUUAAAGUGAUUAUGCGGCAC - 107
Stem-loop(if miRNA) --     GC                 ---------     GC    UUUU    UAUU
  GUCGU  AGUCGCUUUAAAAAAGA         GUAGG  CUAC    AAAA    A
  |||||  |||||||||||||||||         |||||  ||||    ||||
  CGGCG  UUAGUGAAAUUUUUUUU         UAUCC  GGUG    UUUU    A
CA     UA                 ACUUAUAUA     UA    UACU    UUUU
Stem-loop sequence GUCGUGCAGUCGCUUUAAAAAAGAGUAGGGCCUACUUUUAAAAUAUUAAUUUUUUUUUCAUGUGGAUCCUAUAUAUAUUCAUUUUUUUUAAAGUGAUUAUGCGGCAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_019002178.1
ncRNA:24   CACGGCGUAUUAGUGAAAUUUUUU   1
  ||*|||=*||||||||||||||||
targets:774   GUACCGUUUAAUCACUUUAAAAAA   797

2.0 PREDICTED: Juglans regia cell division topological specificity factor homolog, chloroplastic-like (LOC109019802), transcript variant X3, mRNA NA coding protein psRNATarget
XM_019002176.1
ncRNA:24   CACGGCGUAUUAGUGAAAUUUUUU   1
  ||*|||=*||||||||||||||||
targets:889   GUACCGUUUAAUCACUUUAAAAAA   912

2.0 PREDICTED: Juglans regia cell division topological specificity factor homolog, chloroplastic-like (LOC109019802), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018951616.1
ncRNA:24   CACGGCGUAUUAGUGAAAUUUUUU   1
  ||*|||=*||||||||||||||||
targets:973   GUACCGUUUAAUCACUUUAAAAAA   996

2.0 PREDICTED: Juglans regia cell division topological specificity factor homolog, chloroplastic-like (LOC108980629), transcript variant X3, mRNA NA coding protein psRNATarget
XM_018951613.1
ncRNA:24   CACGGCGUAUUAGUGAAAUUUUUU   1
  ||*|||=*||||||||||||||||
targets:990   GUACCGUUUAAUCACUUUAAAAAA   1013

2.0 PREDICTED: Juglans regia cell division topological specificity factor homolog, chloroplastic-like (LOC108980629), transcript variant X1, mRNA NA coding protein psRNATarget
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