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BaseInfo

ncRNA ID novel_jre_miR967
Species Juglans regia
Class miRNA
Genome position NW_017437386.1:20020-20143 [-]
Reference genome wgs.5d
Source SRR1168881
Length 23
Mature sequence(if miRNA) 102 - UUUUGUCAUCCUCAGUCACACGU - 124
Stem-loop(if miRNA) --           UC       C  A   -   C              --A      AUGCCA
  UUUUGUCAUCC  AGUCACA GU CCA UGU ACACAUUUUAGGUG   UUUCAU      U
  |||||||||||  ||||||| || ||| ||| ||||||||||||||   ||||||      C
  AAAACAGUAGG  UCAGUGU UA GGU AUA UGUGUAAAAUUCAC   AAAGUA      C
CU           GA       U  C   U   C              CGA      GAUUAA
Stem-loop sequence UUUUGUCAUCCUCAGUCACACGUACCAUGUCACACAUUUUAGGUGAUUUCAUAUGCCAUCCAAUUAGAUGAAAAGCCACUUAAAAUGUGUCAUAUUGGCAUUUGUGACUAGGGAUGACAAAAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018968421.1
ncRNA:23   UGCACACUGACUCCUACUGUUUU   1
  =*||||||||||||||*||||||
targets:2188   GAGUGUGACUGAGGAUAACAAAA   2210

1.5 PREDICTED: Juglans regia uncharacterized LOC108993487 (LOC108993487), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018966112.1
ncRNA:23   UGCACACUGACUCCUACUGUUUU   1
  ==||||||*||||*|||||||||
targets:1127   GUGUGUGAAUGAGAAUGACAAAA   1149

2.5 PREDICTED: Juglans regia outer envelope pore protein 24, chloroplastic (LOC108991734), mRNA NA coding protein psRNATarget