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BaseInfo

ncRNA ID	novel_jre_miR964
Species	Juglans regia
Class	miRNA
Genome position	NW_017436385.1:35121-35325 [-]
Reference genome	wgs.5d
Source	SRR1168881
Length	24
Mature sequence(if miRNA)	182 - AUGAAGUCACGUCAGUUUGUAGGA - 205
Stem-loop(if miRNA)	--A     -              A   UUGUUU      UU     AUAUA       -UUG     G G G    --------------------A    GUAAAUCAGUGUGCA    UGAAG UCACGUCAGUUUGU GGA      GAUUUG  AAUUA     UAUUGUG    GUAGU G U UCGA                     UGGU               A    ||||| |||||||||||||| |||      ||||||  |||||     |||||||    ||||| | | ||||                     ||||               G    ACUUC AGUGUAGUUAGAUA CCU      UUAGAC  UUAGU     GUAACGU    CGUCA U A AGCU                     UGUU               C CGC     U              -   ---CUU      CU     -ACGA       UUUA     - G G    CUUAUUUUAUCUAUUUAUUUA    GUUUUUCUUCAACGA
Stem-loop sequence	AUGAAGUCACGUCAGUUUGUAGGAUUGUUUGAUUUGUUAAUUAAUAUAUAUUGUGUUGGUAGUGGGUGUCGAAUGGUGUAAAUCAGUGUGCAAGCAGCAACUUCUUUUUGUUGUAUUUAUUUAUCUAUUUUAUUCUCGAGAGUACUGCAUUUUGCAAUGAGCAUGAUUUCCAGAUUUUCUCCAUAGAUUGAUGUGAUCUUCACGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018984601.1	ncRNA:24   AGGAUGUUUGACUGCACUGAAGUA   1   |||||||||=||||||||=||||| targets:2781   UCCUACAAAUUGACGUGAUUUCAU   2804 Target Full Sequence	2.5	PREDICTED: Juglans regia cation/H(+) antiporter 18-like (LOC109005590), mRNA	NA	coding protein	psRNATarget
XM_018994171.1	ncRNA:24   AGGAUGUUUGACUGCACUGAAGUA   1   ||=*|||||=|||||||||||*|| targets:3240   UCUCACAAAUUGACGUGACUUGAU   3263 Target Full Sequence	2.5	PREDICTED: Juglans regia UBP1-associated protein 2C-like (LOC109012455), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_018994156.1	ncRNA:24   AGGAUGUUUGACUGCACUGAAGUA   1   ||=*|||||=|||||||||||*|| targets:3275   UCUCACAAAUUGACGUGACUUGAU   3298 Target Full Sequence	2.5	PREDICTED: Juglans regia UBP1-associated protein 2C-like (LOC109012455), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_018994164.1	ncRNA:24   AGGAUGUUUGACUGCACUGAAGUA   1   ||=*|||||=|||||||||||*|| targets:3280   UCUCACAAAUUGACGUGACUUGAU   3303 Target Full Sequence	2.5	PREDICTED: Juglans regia UBP1-associated protein 2C-like (LOC109012455), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_018961833.1	ncRNA:24   AGGAUGUUUGACUGCACUGAAGUA   1   |=|-|*|||||||=|||||||||| targets:4076   UUC-AGAAACUGAUGUGACUUCAU   4098 Target Full Sequence	2.5	PREDICTED: Juglans regia putative disease resistance protein At3g14460 (LOC108988538), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018961825.1	ncRNA:24   AGGAUGUUUGACUGCACUGAAGUA   1   |=|-|*|||||||=|||||||||| targets:4191   UUC-AGAAACUGAUGUGACUUCAU   4213 Target Full Sequence	2.5	PREDICTED: Juglans regia putative disease resistance protein At3g14460 (LOC108988538), transcript variant X1, mRNA	NA	coding protein	psRNATarget