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BaseInfo

ncRNA ID novel_jre_miR960
Species Juglans regia
Class miRNA
Genome position NW_017433573.1:238-305 [+]
Reference genome wgs.5d
Source SRR1168881
Length 20
Mature sequence(if miRNA) 1 - AGUCCUCGUGUUGCAUCCCU - 20
Stem-loop(if miRNA) --A    UC      -  --   -     UUUU  UU
   GUCC  GUGUUG CA  UCC CUCGU    GU  U
   ||||  |||||| ||  ||| |||||    ||  U
   CAGG  UAUAAC GU  AGG GAGCG    CG  U
CAC    --      A  UA   A     -UUC  CC
Stem-loop sequence AGUCCUCGUGUUGCAUCCCUCGUUUUUGUUUUUUCCGCCUUGCGAGAGGAAUUGACAAUAUGGACCAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018993882.1
ncRNA:20   UCCCUACGUUGUGCUCCUGA   1
  ||||=|||||||||||||=|
targets:338   AGGGGUGCAACACGAGGAUU   357

2.5 PREDICTED: Juglans regia ubiquitin-conjugating enzyme E2 36 (LOC109012315), transcript variant X1, mRNA NA coding protein psRNATarget