Search result

BaseInfo

ncRNA ID novel_jre_miR958
Species Juglans regia
Class miRNA
Genome position NW_017391063.1:601-704 [-]
Reference genome wgs.5d
Source SRR1168881
Length 22
Mature sequence(if miRNA) 1 - UUUUUAAAGUGACUGUACAGCC - 22
Stem-loop(if miRNA) --   GG                 ---------A     GU    UAUU   A  U
  UUG  CAGUCGCUUUGAAAAAG          GUGAG  CUAC    AAA AA U
  |||  |||||||||||||||||          |||||  ||||    ||| || A
  GAC  GUCAGUGAAAUUUUUUU          UACUC  GGUG    UUU UU A
CC   AU                 CACUUAUUUA     UG    CACU   C  U
Stem-loop sequence UUGGGCAGUCGCUUUGAAAAAGAGUGAGGUCUACUAUUAAAAAAUUAAUUUCUUUUCACGUGGGUCUCAUAUUUAUUCACUUUUUUUAAAGUGACUGUACAGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018959423.1
ncRNA:22   CCGACAUGUCAGUGAAAUUUUU   1
  **=*||||||||||||*|||||
targets:501   UAUCGUACAGUCACUUGAAAAA   522

2.5 PREDICTED: Juglans regia high-affinity nitrate transporter 3.1-like (LOC108986715), mRNA NA coding protein psRNATarget