Search result

BaseInfo

ncRNA ID novel_jre_miR948
Species Juglans regia
Class miRNA
Genome position NW_017443598.1:715314-715395 [+]
Reference genome wgs.5d
Source SRR1170970
Length 24
Mature sequence(if miRNA) 1 - GUAUUUUAUUAAUGUAAUUGGCUG - 24
Stem-loop(if miRNA) --          A    AAU   CUGCAUCACUUUUCUUUA
  GUAUUUUAUU AUGU   UGG                  A
  |||||||||| ||||   |||                  U
  CGUGAGAUGA UACA   AAU                  A
UG          C    -CU   UAGUUUUAUUAAUAAAAU
Stem-loop sequence GUAUUUUAUUAAUGUAAUUGGCUGCAUCACUUUUCUUUAAUAUAAAAUAAUUAUUUUGAUUAAUCACAUCAGUAGAGUGCGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018958048.1
ncRNA:24   GUCGGUUAAUGUAAUUAUUUUAUG   1
  =**|||||||||*||||||||||*
targets:49   UUACCAAUUACACUAAUAAAAUAG   72

2.5 PREDICTED: Juglans regia probable LRR receptor-like serine/threonine-protein kinase At4g26540 (LOC108985669), mRNA NA coding protein psRNATarget