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BaseInfo

ncRNA ID	novel_jre_miR940
Species	Juglans regia
Class	miRNA
Genome position	NW_017388874.1:526624-526743 [+]
Reference genome	wgs.5d
Source	SRR1170970
Length	24
Mature sequence(if miRNA)	97 - AAGCGACUGCACGACGACUGCACG - 120
Stem-loop(if miRNA)	--C   AA  C                   A    ----------   GU     AUU   A  U    GCA  UG CGUGCAGUCGCUUUGAAAA GAGU          GGG  CUACU   AAA AA U    |||  || ||||||||||||||||||| ||||          |||  |||||   ||| || A    CGU  GC GCACGUCAGCGAAACUUUU UUCA          CCC  GGUGG   UUU UU A GCA   CA  A                   -    CUUAUUUAUU   UG     ACU   C  U
Stem-loop sequence	CGCAAAUGCCGUGCAGUCGCUUUGAAAAAGAGUGGGGUCUACUAUUAAAAAAUUAAUUUCUUUUCAGGUGGGUCCCUUAUUUAUUCACUUUUUUCAAAGCGACUGCACGACGACUGCACG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018964869.1	ncRNA:24   GCACGUCAGCAGCACGUCAGCGAA   1   =|*|||**||*||||||||||||| targets:1074   UGCGCAAGCGCCGUGCAGUCGCUU   1097 Target Full Sequence	3.0	PREDICTED: Juglans regia histone-lysine N-methyltransferase ATXR2-like (LOC108990784), mRNA	NA	coding protein	psRNATarget
XM_018980788.1	ncRNA:24   GCACGUCAGCAGCACGUCAGCGAA   1   =|*|||**||*||||||||||||| targets:1603   UGCGCAAGCGCCGUGCAGUCGCUU   1626 Target Full Sequence	3.0	PREDICTED: Juglans regia histone-lysine N-methyltransferase ATXR2-like (LOC109002870), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018980787.1	ncRNA:24   GCACGUCAGCAGCACGUCAGCGAA   1   =|*|||**||*||||||||||||| targets:1676   UGCGCAAGCGCCGUGCAGUCGCUU   1699 Target Full Sequence	3.0	PREDICTED: Juglans regia histone-lysine N-methyltransferase ATXR2-like (LOC109002870), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018980786.1	ncRNA:24   GCACGUCAGCAGCACGUCAGCGAA   1   =|*|||**||*||||||||||||| targets:1900   UGCGCAAGCGCCGUGCAGUCGCUU   1923 Target Full Sequence	3.0	PREDICTED: Juglans regia histone-lysine N-methyltransferase ATXR2-like (LOC109002870), transcript variant X1, mRNA	NA	coding protein	psRNATarget