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BaseInfo

ncRNA ID novel_jre_miR936
Species Juglans regia
Class miRNA
Genome position NW_017439897.1:368-479 [-]
Reference genome wgs.5d
Source SRR1170970
Length 24
Mature sequence(if miRNA) 1 - AAAUAAUCCGUCACAAAUACUCGU - 24
Stem-loop(if miRNA) --GCU          CA       UCUACCAA     CCA  UC    UAAA     UC
     UAUUUGUGAU  GUUAUUU        AAUGA   UU  UUGU    AUGAA  U
     ||||||||||  |||||||        |||||   ||  ||||    |||||
     AUAAACACUG  UAAUAAA        UUACU   AA  AACG    UACUU  G
UGCUC          CC       CACUACUA     ---  UA    ---C     UU
Stem-loop sequence GCUUAUUUGUGAUCAGUUAUUUUCUACCAAAAUGACCAUUUCUUGUUAAAAUGAAUCUGUUUUCAUCGCAAAUAAUCAUUAUCAUCACAAAUAAUCCGUCACAAAUACUCGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018969796.1
ncRNA:24   UGCUCAUAAACACUGCCUAAUAAA   1
  ||||||||||||||||||||||||
targets:1626   ACGAGUAUUUGUGACGGAUUAUUU   1649

0.0 PREDICTED: Juglans regia zinc finger protein CONSTANS-LIKE 16-like (LOC108994549), mRNA NA coding protein psRNATarget
XM_018967506.1
ncRNA:24   UGCUCAUAAACACUGCCUAAUAAA   1
  |=*||*||||||||||*|||||||
targets:1143   AUAAGCAUUUGUGACGAAUUAUUU   1166

2.5 PREDICTED: Juglans regia peptide deformylase 1B, chloroplastic (LOC108992837), transcript variant X3, mRNA NA coding protein psRNATarget