ncRNA ID | novel_jre_miR936 |
Species | Juglans regia |
Class | miRNA |
Genome position | NW_017439897.1:368-479 [-] |
Reference genome | wgs.5d |
Source | SRR1170970 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AAAUAAUCCGUCACAAAUACUCGU - 24 |
Stem-loop(if miRNA) |
--GCU          CA       UCUACCAA     CCA  UC    UAAA     UC      UAUUUGUGAU  GUUAUUU        AAUGA   UU  UUGU    AUGAA  U      ||||||||||  |||||||        |||||   ||  ||||    |||||      AUAAACACUG  UAAUAAA        UUACU   AA  AACG    UACUU  G UGCUC          CC       CACUACUA     ---  UA    ---C     UU |
Stem-loop sequence | GCUUAUUUGUGAUCAGUUAUUUUCUACCAAAAUGACCAUUUCUUGUUAAAAUGAAUCUGUUUUCAUCGCAAAUAAUCAUUAUCAUCACAAAUAAUCCGUCACAAAUACUCGU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_018969796.1 |
|
0.0 | PREDICTED: Juglans regia zinc finger protein CONSTANS-LIKE 16-like (LOC108994549), mRNA | NA | coding protein | psRNATarget | |||||||||
XM_018967506.1 |
|
2.5 | PREDICTED: Juglans regia peptide deformylase 1B, chloroplastic (LOC108992837), transcript variant X3, mRNA | NA | coding protein | psRNATarget |