ncRNA ID | novel_jre_miR920 |
Species | Juglans regia |
Class | miRNA |
Genome position | NW_017443617.1:740630-740737 [+] |
Reference genome | wgs.5d |
Source | SRR1170969 |
Length | 24 |
Mature sequence(if miRNA) | 1 - UGCUGUGCAGUCGCUUUGAAAAAG - 24 |
Stem-loop(if miRNA) |
--U  UG  C              A     ----------  GU   -CUAU       U    GC  UG AGUCGCUUUGAAAA GAGUG          GG  CUA     UAAAAAA U    ||  || |||||||||||||| |||||          ||  |||     |||||||    CG  GC UUAGUGAAGCUUUU UUCAC          UC  GGU     AUUUUUU A UCG  GU  A              -     UUAUUUAUGU  UG   AUAUU       A |
Stem-loop sequence | UGCUGUGCAGUCGCUUUGAAAAAGAGUGGGGUCUACUAUUAAAAAAUUAAUUUUUUAUUAUAUGGGUCUUGUAUUUAUUCACUUUUUUCGAAGUGAUUACGUGGCGCU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_018969224.1 |
|
2.5 | PREDICTED: Juglans regia endoglucanase 17 (LOC108994130), mRNA | NA | coding protein | psRNATarget |