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BaseInfo

ncRNA ID novel_jre_miR914
Species Juglans regia
Class miRNA
Genome position NW_017440507.1:26495-26602 [-]
Reference genome wgs.5d
Source SRR1170969
Length 24
Mature sequence(if miRNA) 85 - CGCCGUGUAAUCGUUUUGAAAAAG - 108
Stem-loop(if miRNA) --  C                      G   -----------       U  U      U
  CG CGUGUAAUCGUUUUGAAAAAGA UGA           GGUUUAC AU AAAAAA U
  || |||||||||||||||||||||| |||           ||||||| || |||||| A
  GC GCGCAUUAGUGAAACUUUUUUU ACU           CUAAGUG UA UUUUUU A
UG  A                      -   UAUUUUGUAUC       -  C      U
Stem-loop sequence CGCCGUGUAAUCGUUUUGAAAAAGAGUGAGGUUUACUAUUAAAAAAUUAAUUUUUUUCAUGUGAAUCCUAUGUUUUAUUCAUUUUUUUCAAAGUGAUUACGCGACGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018970092.1
ncRNA:24   GAAAAAGUUUUGCUAAUGUGCCGC   1
  =|||||||||=|||||=|||||||
targets:3831   UUUUUUCAAAGCGAUUGCACGGCG   3854

2.5 PREDICTED: Juglans regia translation initiation factor eIF-2B subunit epsilon (LOC108994766), transcript variant X6, mRNA NA coding protein psRNATarget